PDB entry 3ptf

View 3ptf on RCSB PDB site
Description: X-ray structure of the non-covalent complex between UbcH5A and Ubiquitin
Class: ligase
Keywords: protein-protein complex, E2, ubiquitin, ubiquitin conjugating enzyme, alpha/beta, LIGASE
Deposited on 2010-12-02, released 2011-05-11
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-05-11, with a file datestamp of 2011-05-06.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.212
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ubiquitin-conjugating enzyme e2 d1
    Species: Homo sapiens [TaxId:9606]
    Gene: SFT, UBC5A, UBCH5, UBCH5A, UBE2D1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P51668 (6-152)
      • expression tag (0-5)
    Domains in SCOPe 2.08: d3ptfa1, d3ptfa2
  • Chain 'B':
    Compound: ubiquitin-conjugating enzyme e2 d1
    Species: Homo sapiens [TaxId:9606]
    Gene: SFT, UBC5A, UBCH5, UBCH5A, UBE2D1
    Database cross-references and differences (RAF-indexed):
    • Uniprot P51668 (6-152)
      • expression tag (1-5)
    Domains in SCOPe 2.08: d3ptfb1, d3ptfb2
  • Chain 'C':
    Compound: Polyubiquitin-B
    Species: Homo sapiens [TaxId:9606]
    Gene: Ubiquitin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3ptfc_
  • Chain 'D':
    Compound: Polyubiquitin-B
    Species: Homo sapiens [TaxId:9606]
    Gene: Ubiquitin
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG47 (3-End)
      • expression tag (2)
    Domains in SCOPe 2.08: d3ptfd1, d3ptfd2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3ptfA (A:)
gshmlemalkriqkelsdlqrdppahcsagpvgddlfhwqatimgppdsayqggvffltv
hfptdypfkppkiafttkiyhpninsngsicldilrsqwspaltvskvllsicsllcdpn
pddplvpdiaqiyksdkekynrharewtqkyam

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3ptfB (B:)
gshmlemalkriqkelsdlqrdppahcsagpvgddlfhwqatimgppdsayqggvffltv
hfptdypfkppkiafttkiyhpninsngsicldilrsqwspaltvskvllsicsllcdpn
pddplvpdiaqiyksdkekynrharewtqkyam

    Sequence, based on observed residues (ATOM records): (download) 
    >3ptfB (B:)
shmlemalkriqkelsdlqrdppahcsagpvgddlfhwqatimgppdsayqggvffltvh
fptdypfkppkiafttkiyhpninsngsicldilrsqwspaltvskvllsicsllcdpnp
ddplvpdiaqiyksdkekynrharewtqkyam

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3ptfC (C:)
gshmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtls
dyniqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >3ptfC (C:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3ptfD (D:)
gshmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtls
dyniqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >3ptfD (D:)
hmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdy
niqkestlhlvlrl