PDB entry 3pot

View 3pot on RCSB PDB site
Description: Structural analysis of a Ni(III)-methyl species in methyl-coenzyme M reductase from Methanothermobacter marburgensis
Class: transferase
Keywords: metal-binding, nickel, methyl-coenzyme m reductase, methanogenesis, methylation, transferase
Deposited on 2010-11-23, released 2011-04-13
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-03-29, with a file datestamp of 2017-03-24.
Experiment type: XRAY
Resolution: 1.2 Å
R-factor: N/A
AEROSPACI score: 0.65 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Methyl-coenzyme M reductase I subunit alpha
    Species: Methanothermobacter marburgensis [TaxId:145263]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3pota1, d3pota2
  • Chain 'B':
    Compound: Methyl-coenzyme M reductase I subunit beta
    Species: Methanothermobacter marburgensis [TaxId:145263]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3potb1, d3potb2
  • Chain 'C':
    Compound: Methyl-coenzyme M reductase I subunit gamma
    Species: Methanothermobacter marburgensis [TaxId:145263]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3potc_
  • Chain 'D':
    Compound: Methyl-coenzyme M reductase I subunit alpha
    Species: Methanothermobacter marburgensis [TaxId:145263]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3potd1, d3potd2
  • Chain 'E':
    Compound: Methyl-coenzyme M reductase I subunit beta
    Species: Methanothermobacter marburgensis [TaxId:145263]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3pote1, d3pote2
  • Chain 'F':
    Compound: Methyl-coenzyme M reductase I subunit gamma
    Species: Methanothermobacter marburgensis [TaxId:145263]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3potf_
  • Heterogens: MG, F43, COM, TXZ, TP7, 06C, K, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3potA (A:)
    madklfinalkkkfeespeekkttfytlggwkqserktefvnagkevaakrgipqynpdi
    gtplgqrvlmpyqvsttdtyvegddlhfvnnaamqqmwddirrtvivglnhahaviekrl
    gkevtpetithyletvnhampgaavvqehmvethpalvadsyvkvftgndeiadeidpaf
    vidinkqfpedqaetlkaevgdgiwqvvriptivsrtcdgattsrwsamqigmsmisayk
    qaageaatgdfayaakhaevihmgtylpvrrargenepggvpfgyladicqssrvnyedp
    vrvsldvvatgamlydqiwlgsymsggvgftqyataaytdnilddftyfgkeyvedkygl
    ceapnnmdtvldvatevtfygleqyeeypalledqfggsqraavvaaaagcstafatgna
    qtglsgwylsmylhkeqhsrlgfygydlqdqcgasnvfsirgdeglplelrgpnypnyam
    nvghqgeyagisqaphaargdafvfnplvkiafaddnlvfdftnvrgefakgalrefepa
    geralitpak
    

    Sequence, based on observed residues (ATOM records): (download)
    >3potA (A:)
    adklfinalkkkfeespeekkttfytlggwkqserktefvnagkevaakrgipqynpdig
    tplgqrvlmpyqvsttdtyvegddlhfvnnaamqqmwddirrtvivglnhahaviekrlg
    kevtpetithyletvnhampgaavvqehmvethpalvadsyvkvftgndeiadeidpafv
    idinkqfpedqaetlkaevgdgiwqvvriptivsrtcdgattsrwsamqigmsmisaykq
    aageaatgdfayaakhaevihmgtylpvrrargenepggvpfgyladicqssrvnyedpv
    rvsldvvatgamlydqiwlgsymsggvgftqyataaytdnilddftyfgkeyvedkyglc
    eapnnmdtvldvatevtfygleqyeeypalledqfggsqraavvaaaagcstafatgnaq
    tglsgwylsmylhkeqhsrlgfygydlqdqcgasnvfsirgdeglplelrgpnypnyamn
    vghqgeyagisqaphaargdafvfnplvkiafaddnlvfdftnvrgefakgalrefepag
    eralitpa
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3potB (B:)
    makfedkvdlyddrgnlveeqvplealsplrnpaiksivqgikrtvavnlegienalkta
    kvggpackimgreldldivgnaesiaaaakemiqvtedddtnvellgggkralvqvpsar
    fdvaaeysaaplvtatafvqaiinefdvsmydanmvkaavlgrypqsveymganiatmld
    ipqklegpgyalrnimvnhvvaatlkntlqaaalstileqtamfemgdavgafermhllg
    layqgmnadnlvfdlvkangkegtvgsviadlveraledgvikvekeltdykvygtddla
    mwnayaaaglmaatmvnqgaaraaqgvsstllyyndliefetglpsvdfgkvegtavgfs
    ffshsiyggggpgifngnhivtrhskgfaipcvaaamaldagtqmfspeatsglikevfs
    qvdefreplkyvveaaaeiknei
    

    Sequence, based on observed residues (ATOM records): (download)
    >3potB (B:)
    akfedkvdlyddrgnlveeqvplealsplrnpaiksivqgikrtvavnlegienalktak
    vggpackimgreldldivgnaesiaaaakemiqvtedddtnvellgggkralvqvpsarf
    dvaaeysaaplvtatafvqaiinefdvsmydanmvkaavlgrypqsveymganiatmldi
    pqklegpgyalrnimvnhvvaatlkntlqaaalstileqtamfemgdavgafermhllgl
    ayqgmnadnlvfdlvkangkegtvgsviadlveraledgvikvekeltdykvygtddlam
    wnayaaaglmaatmvnqgaaraaqgvsstllyyndliefetglpsvdfgkvegtavgfsf
    fshsiyggggpgifngnhivtrhskgfaipcvaaamaldagtqmfspeatsglikevfsq
    vdefreplkyvveaaaeiknei
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3potC (C:)
    maqyypgttkvaqnrrnfcnpeyeleklreisdedvvkilghrapgeeypsvhppleemd
    epedairemvepidgakagdrvryiqftdsmyfapaqpyvrsraylcryrgadagtlsgr
    qiietrerdlekiskelleteffdparsgvrgksvhghslrldedgmmfdmlrrqiynkd
    tgrvemvknqigdeldepvdlgepldeetlmekttiyrvdgeayrddveaveimqrihvl
    rsqggfnle
    

    Sequence, based on observed residues (ATOM records): (download)
    >3potC (C:)
    aqyypgttkvaqnrrnfcnpeyeleklreisdedvvkilghrapgeeypsvhppleemde
    pedairemvepidgakagdrvryiqftdsmyfapaqpyvrsraylcryrgadagtlsgrq
    iietrerdlekiskelleteffdparsgvrgksvhghslrldedgmmfdmlrrqiynkdt
    grvemvknqigdeldepvdlgepldeetlmekttiyrvdgeayrddveaveimqrihvlr
    sqggfn
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3potD (D:)
    madklfinalkkkfeespeekkttfytlggwkqserktefvnagkevaakrgipqynpdi
    gtplgqrvlmpyqvsttdtyvegddlhfvnnaamqqmwddirrtvivglnhahaviekrl
    gkevtpetithyletvnhampgaavvqehmvethpalvadsyvkvftgndeiadeidpaf
    vidinkqfpedqaetlkaevgdgiwqvvriptivsrtcdgattsrwsamqigmsmisayk
    qaageaatgdfayaakhaevihmgtylpvrrargenepggvpfgyladicqssrvnyedp
    vrvsldvvatgamlydqiwlgsymsggvgftqyataaytdnilddftyfgkeyvedkygl
    ceapnnmdtvldvatevtfygleqyeeypalledqfggsqraavvaaaagcstafatgna
    qtglsgwylsmylhkeqhsrlgfygydlqdqcgasnvfsirgdeglplelrgpnypnyam
    nvghqgeyagisqaphaargdafvfnplvkiafaddnlvfdftnvrgefakgalrefepa
    geralitpak
    

    Sequence, based on observed residues (ATOM records): (download)
    >3potD (D:)
    adklfinalkkkfeespeekkttfytlggwkqserktefvnagkevaakrgipqynpdig
    tplgqrvlmpyqvsttdtyvegddlhfvnnaamqqmwddirrtvivglnhahaviekrlg
    kevtpetithyletvnhampgaavvqehmvethpalvadsyvkvftgndeiadeidpafv
    idinkqfpedqaetlkaevgdgiwqvvriptivsrtcdgattsrwsamqigmsmisaykq
    aageaatgdfayaakhaevihmgtylpvrrargenepggvpfgyladicqssrvnyedpv
    rvsldvvatgamlydqiwlgsymsggvgftqyataaytdnilddftyfgkeyvedkyglc
    eapnnmdtvldvatevtfygleqyeeypalledqfggsqraavvaaaagcstafatgnaq
    tglsgwylsmylhkeqhsrlgfygydlqdqcgasnvfsirgdeglplelrgpnypnyamn
    vghqgeyagisqaphaargdafvfnplvkiafaddnlvfdftnvrgefakgalrefepag
    eralitpa
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >3potE (E:)
    makfedkvdlyddrgnlveeqvplealsplrnpaiksivqgikrtvavnlegienalkta
    kvggpackimgreldldivgnaesiaaaakemiqvtedddtnvellgggkralvqvpsar
    fdvaaeysaaplvtatafvqaiinefdvsmydanmvkaavlgrypqsveymganiatmld
    ipqklegpgyalrnimvnhvvaatlkntlqaaalstileqtamfemgdavgafermhllg
    layqgmnadnlvfdlvkangkegtvgsviadlveraledgvikvekeltdykvygtddla
    mwnayaaaglmaatmvnqgaaraaqgvsstllyyndliefetglpsvdfgkvegtavgfs
    ffshsiyggggpgifngnhivtrhskgfaipcvaaamaldagtqmfspeatsglikevfs
    qvdefreplkyvveaaaeiknei
    

    Sequence, based on observed residues (ATOM records): (download)
    >3potE (E:)
    akfedkvdlyddrgnlveeqvplealsplrnpaiksivqgikrtvavnlegienalktak
    vggpackimgreldldivgnaesiaaaakemiqvtedddtnvellgggkralvqvpsarf
    dvaaeysaaplvtatafvqaiinefdvsmydanmvkaavlgrypqsveymganiatmldi
    pqklegpgyalrnimvnhvvaatlkntlqaaalstileqtamfemgdavgafermhllgl
    ayqgmnadnlvfdlvkangkegtvgsviadlveraledgvikvekeltdykvygtddlam
    wnayaaaglmaatmvnqgaaraaqgvsstllyyndliefetglpsvdfgkvegtavgfsf
    fshsiyggggpgifngnhivtrhskgfaipcvaaamaldagtqmfspeatsglikevfsq
    vdefreplkyvveaaaeiknei
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >3potF (F:)
    maqyypgttkvaqnrrnfcnpeyeleklreisdedvvkilghrapgeeypsvhppleemd
    epedairemvepidgakagdrvryiqftdsmyfapaqpyvrsraylcryrgadagtlsgr
    qiietrerdlekiskelleteffdparsgvrgksvhghslrldedgmmfdmlrrqiynkd
    tgrvemvknqigdeldepvdlgepldeetlmekttiyrvdgeayrddveaveimqrihvl
    rsqggfnle
    

    Sequence, based on observed residues (ATOM records): (download)
    >3potF (F:)
    aqyypgttkvaqnrrnfcnpeyeleklreisdedvvkilghrapgeeypsvhppleemde
    pedairemvepidgakagdrvryiqftdsmyfapaqpyvrsraylcryrgadagtlsgrq
    iietrerdlekiskelleteffdparsgvrgksvhghslrldedgmmfdmlrrqiynkdt
    grvemvknqigdeldepvdlgepldeetlmekttiyrvdgeayrddveaveimqrihvlr
    sqggfn