PDB entry 3phd

View 3phd on RCSB PDB site
Description: Crystal structure of human HDAC6 in complex with ubiquitin
Class: protein binding
Keywords: HDAC6, ubiquitin, Structural Genomics, Structural Genomics Consortium, SGC, PROTEIN BINDING
Deposited on 2010-11-03, released 2011-02-23
The last revision prior to the SCOPe 2.04 freeze date was dated 2012-02-08, with a file datestamp of 2012-02-03.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.235
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Histone deacetylase 6
    Species: Homo sapiens [TaxId:9606]
    Gene: HDAC6, KIAA0901, JM21
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Histone deacetylase 6
    Species: Homo sapiens [TaxId:9606]
    Gene: HDAC6, KIAA0901, JM21
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Histone deacetylase 6
    Species: Homo sapiens [TaxId:9606]
    Gene: HDAC6, KIAA0901, JM21
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Histone deacetylase 6
    Species: Homo sapiens [TaxId:9606]
    Gene: HDAC6, KIAA0901, JM21
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Polyubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBB, UBA52, UBCEP2, UBC, RPS27A, UBA80, UBCEP1
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Polyubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBB, UBA52, UBCEP2, UBC, RPS27A, UBA80, UBCEP1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.04: d3phdf_
  • Chain 'G':
    Compound: Polyubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBB, UBA52, UBCEP2, UBC, RPS27A, UBA80, UBCEP1
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Polyubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBB, UBA52, UBCEP2, UBC, RPS27A, UBA80, UBCEP1
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >3phdF (F:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrlrgg
    

    Sequence, based on observed residues (ATOM records): (download)
    >3phdF (F:)
    rlrgg
    

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.