PDB entry 3phd

View 3phd on RCSB PDB site
Description: Crystal structure of human HDAC6 in complex with ubiquitin
Class: protein binding
Keywords: HDAC6, ubiquitin, Structural Genomics, Structural Genomics Consortium, SGC, PROTEIN BINDING
Deposited on 2010-11-03, released 2011-02-23
The last revision prior to the SCOPe 2.04 freeze date was dated 2012-02-08, with a file datestamp of 2012-02-03.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.235
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: Histone deacetylase 6
  Species: Homo sapiens [TaxId:9606]
  Gene: HDAC6, KIAA0901, JM21
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9UBN7 (0-End)
• Chain 'B':
  Compound: Histone deacetylase 6
  Species: Homo sapiens [TaxId:9606]
  Gene: HDAC6, KIAA0901, JM21
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9UBN7 (0-End)
• Chain 'C':
  Compound: Histone deacetylase 6
  Species: Homo sapiens [TaxId:9606]
  Gene: HDAC6, KIAA0901, JM21
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9UBN7
• Chain 'D':
  Compound: Histone deacetylase 6
  Species: Homo sapiens [TaxId:9606]
  Gene: HDAC6, KIAA0901, JM21
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9UBN7
• Chain 'E':
  Compound: Polyubiquitin
  Species: Homo sapiens [TaxId:9606]
  Gene: UBB, UBA52, UBCEP2, UBC, RPS27A, UBA80, UBCEP1
  Database cross-references and differences (RAF-indexed):
  • Uniprot P62988 (Start-75)
• Chain 'F':
  Compound: Polyubiquitin
  Species: Homo sapiens [TaxId:9606]
  Gene: UBB, UBA52, UBCEP2, UBC, RPS27A, UBA80, UBCEP1
  Database cross-references and differences (RAF-indexed):
  • Uniprot P62988 (Start-75)
  Domains in SCOPe 2.04: d3phdf_
• Chain 'G':
  Compound: Polyubiquitin
  Species: Homo sapiens [TaxId:9606]
  Gene: UBB, UBA52, UBCEP2, UBC, RPS27A, UBA80, UBCEP1
  Database cross-references and differences (RAF-indexed):
  • Uniprot P62988 (Start-75)
• Chain 'H':
  Compound: Polyubiquitin
  Species: Homo sapiens [TaxId:9606]
  Gene: UBB, UBA52, UBCEP2, UBC, RPS27A, UBA80, UBCEP1
  Database cross-references and differences (RAF-indexed):
  • Uniprot P62988 (Start-75)
• Heterogens: ZN, HOH

PDB Chain Sequences:

• Chain 'A':
  No sequence available.
  
  
• Chain 'B':
  No sequence available.
  
  
• Chain 'C':
  No sequence available.
  
  
• Chain 'D':
  No sequence available.
  
  
• Chain 'E':
  No sequence available.
  
  
• Chain 'F':
  Sequence, based on SEQRES records: (download)
  

  >3phdF (F:)
  mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
  iqkestlhlvlrlrgg
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >3phdF (F:)
  rlrgg
  

  
  
• Chain 'G':
  No sequence available.
  
  
• Chain 'H':
  No sequence available.