PDB entry 3pgy

View 3pgy on RCSB PDB site
Description: Serine hydroxymethyltransferase from Staphylococcus aureus, S95P mutant.
Class: transferase
Keywords: structural genomics, IDP00749, Center for Structural Genomics of Infectious Diseases, CSGID, serine hydroxymethyltransferase, Transferase
Deposited on 2010-11-02, released 2010-11-17
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-11-08, with a file datestamp of 2017-11-03.
Experiment type: XRAY
Resolution: 1.92 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: serine hydroxymethyltransferase
    Species: Staphylococcus aureus [TaxId:93062]
    Gene: glyA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5HE87 (3-414)
      • engineered mutation (97)
    Domains in SCOPe 2.08: d3pgya_
  • Chain 'B':
    Compound: serine hydroxymethyltransferase
    Species: Staphylococcus aureus [TaxId:93062]
    Gene: glyA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5HE87 (3-End)
      • engineered mutation (97)
    Domains in SCOPe 2.08: d3pgyb_
  • Chain 'C':
    Compound: serine hydroxymethyltransferase
    Species: Staphylococcus aureus [TaxId:93062]
    Gene: glyA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5HE87 (3-End)
      • expression tag (2)
      • engineered mutation (97)
    Domains in SCOPe 2.08: d3pgyc1, d3pgyc2
  • Chain 'D':
    Compound: serine hydroxymethyltransferase
    Species: Staphylococcus aureus [TaxId:93062]
    Gene: glyA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5HE87 (3-End)
      • expression tag (1-2)
      • engineered mutation (97)
    Domains in SCOPe 2.08: d3pgyd1, d3pgyd2
  • Heterogens: CIT, GLY, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3pgyA (A:)
snamsyitkqdkviaeaierefqrqnsnieliasenfvseavmeaqgsvltnkyaegypg
rryyggcefvdvtesiaidrakalfgaehvnvqphsgpqanmavylvalemgdtvlgmnl
shgghlthgapvnfsgkfynfveygvdkdterinydevrklalehkpklivagasaysrt
idfkkfkeiadevnaklmvdmahiaglvaaglhpnpveyadfvtttthktlrgprggmil
ckeeykkdidktifpgiqggplehviaakavafgealennfktyqqqvvknakvlaeali
negfrivsggtdnhlvavdvkgsigltgkeaeetldsvgitcnkntipfdqekpfvtsgi
rlgtpaattrgfdekafeevakiislalknskdeeklqqakervakltaeyplyq

    Sequence, based on observed residues (ATOM records): (download) 
    >3pgyA (A:)
msyitkqdkviaeaierefqrqnsnieliasenfvseavmeaqgsvltnkyaegypgrrg
gcefvdvtesiaidrakalfgaehvnvqphsgpqanmavylvalemgdtvlgmnlshpvn
fsgkfynfveygvdkdterinydevrklalehkpklivagasaysrtidfkkfkeiadev
naklmvdmahiaglvaaglhpnpveyadfvtttthktlrgprggmilckeeykkdidkti
fpgiqggplehviaakavafgealennfktyqqqvvknakvlaealinegfrivsggtdn
hlvavdvkgsigltgkeaeetldsvgitcnkntipfdqekpfvtsgirlgtpaattrgfd
ekafeevakiislalknskdeeklqqakervakltaeyplyq

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3pgyB (B:)
snamsyitkqdkviaeaierefqrqnsnieliasenfvseavmeaqgsvltnkyaegypg
rryyggcefvdvtesiaidrakalfgaehvnvqphsgpqanmavylvalemgdtvlgmnl
shgghlthgapvnfsgkfynfveygvdkdterinydevrklalehkpklivagasaysrt
idfkkfkeiadevnaklmvdmahiaglvaaglhpnpveyadfvtttthktlrgprggmil
ckeeykkdidktifpgiqggplehviaakavafgealennfktyqqqvvknakvlaeali
negfrivsggtdnhlvavdvkgsigltgkeaeetldsvgitcnkntipfdqekpfvtsgi
rlgtpaattrgfdekafeevakiislalknskdeeklqqakervakltaeyplyq

    Sequence, based on observed residues (ATOM records): (download) 
    >3pgyB (B:)
msyitkqdkviaeaierefqrqnsnieliasenfvseavmeaqgsvltnkyaegypgrry
yggcefvdvtesiaidrakalfgaehvnvqphsgpqanmavylvalemgdtvlgmnlsha
pvnfsgkfynfveygvdkdterinydevrklalehkpklivagasaysrtidfkkfkeia
devnaklmvdmahiaglvaaglhpnpveyadfvtttthktlrgprggmilckeeykkdid
ktifpgiqggplehviaakavafgealennfktyqqqvvknakvlaealinegfrivsgg
tdnhlvavdvkgsigltgkeaeetldsvgitcnkntipfdqekpfvtsgirlgtpaattr
gfdekafeevakiislalknskdeeklqqakervakltaeyply

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3pgyC (C:)
snamsyitkqdkviaeaierefqrqnsnieliasenfvseavmeaqgsvltnkyaegypg
rryyggcefvdvtesiaidrakalfgaehvnvqphsgpqanmavylvalemgdtvlgmnl
shgghlthgapvnfsgkfynfveygvdkdterinydevrklalehkpklivagasaysrt
idfkkfkeiadevnaklmvdmahiaglvaaglhpnpveyadfvtttthktlrgprggmil
ckeeykkdidktifpgiqggplehviaakavafgealennfktyqqqvvknakvlaeali
negfrivsggtdnhlvavdvkgsigltgkeaeetldsvgitcnkntipfdqekpfvtsgi
rlgtpaattrgfdekafeevakiislalknskdeeklqqakervakltaeyplyq

    Sequence, based on observed residues (ATOM records): (download) 
    >3pgyC (C:)
amsyitkqdkviaeaierefqrqnsnieliasenfvseavmeaqgsvltnkyaegypgrr
ggcefvdvtesiaidrakalfgaehvnvqphsgpqanmavylvalemgdtvlgmnvnfsg
kfynfveygvdkdterinydevrklalehkpklivagasaysrtidfkkfkeiadevnak
lmvdmahiaglvaaglhpnpveyadfvtttthktlrgprggmilckeeykkdidktifpg
iqggplehviaakavafgealennfktyqqqvvknakvlaealinegfrivsggtdnhlv
avdvkgsigltgkeaeetldsvgitcnkntipfdqekpfvtsgirlgtpaattrgfdeka
feevakiislalknskdeeklqqakervakltaeyply

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3pgyD (D:)
snamsyitkqdkviaeaierefqrqnsnieliasenfvseavmeaqgsvltnkyaegypg
rryyggcefvdvtesiaidrakalfgaehvnvqphsgpqanmavylvalemgdtvlgmnl
shgghlthgapvnfsgkfynfveygvdkdterinydevrklalehkpklivagasaysrt
idfkkfkeiadevnaklmvdmahiaglvaaglhpnpveyadfvtttthktlrgprggmil
ckeeykkdidktifpgiqggplehviaakavafgealennfktyqqqvvknakvlaeali
negfrivsggtdnhlvavdvkgsigltgkeaeetldsvgitcnkntipfdqekpfvtsgi
rlgtpaattrgfdekafeevakiislalknskdeeklqqakervakltaeyplyq

    Sequence, based on observed residues (ATOM records): (download) 
    >3pgyD (D:)
namsyitkqdkviaeaierefqrqnsnieliasenfvseavmeaqgsvltnkyaegypgr
ryyggcefvdvtesiaidrakalfgaehvnvqphsgpqanmavylvalemgdtvlgmnpv
nfsgkfynfveygvdkdterinydevrklalehkpklivagasaysrtidfkkfkeiade
vnaklmvdmahiaglvaaglhpnpveyadfvtttthktlrgprggmilckeeykkdidkt
ifpgiqggplehviaakavafgealennfktyqqqvvknakvlaealinegfrivsggtd
nhlvavdvkgsigltgkeaeetldsvgitcnkntipfdqekpfvtsgirlgtpaattrgf
dekafeevakiislalknskdeeklqqakervakltaeyply