PDB entry 3pdu
View 3pdu on RCSB PDB site
Description: Crystal structure of gamma-hydroxybutyrate dehydrogenase from Geobacter sulfurreducens in complex with NADP+
Class: oxidoreductase
Keywords: gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde reductase, glyoxylate metabolism, Geobacter sulfurreducens, dehydrogenase/reductase, OXIDOREDUCTASE
Deposited on
2010-10-25, released
2012-01-11
The last revision prior to the SCOPe 2.03 freeze date was dated
2012-01-11, with a file datestamp of
2012-01-06.
Experiment type: XRAY
Resolution: 1.89 Å
R-factor: 0.151
AEROSPACI score: 0.55
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: 3-hydroxyisobutyrate dehydrogenase family protein
Species: Geobacter sulfurreducens [TaxId:35554]
Gene: GSU1372
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3pdua1, d3pdua2 - Chain 'B':
Compound: 3-hydroxyisobutyrate dehydrogenase family protein
Species: Geobacter sulfurreducens [TaxId:35554]
Gene: GSU1372
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3pdub1, d3pdub2 - Chain 'C':
Compound: 3-hydroxyisobutyrate dehydrogenase family protein
Species: Geobacter sulfurreducens [TaxId:35554]
Gene: GSU1372
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3pduc1, d3pduc2 - Chain 'D':
Compound: 3-hydroxyisobutyrate dehydrogenase family protein
Species: Geobacter sulfurreducens [TaxId:35554]
Gene: GSU1372
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3pdud1, d3pdud2 - Chain 'E':
Compound: 3-hydroxyisobutyrate dehydrogenase family protein
Species: Geobacter sulfurreducens [TaxId:35554]
Gene: GSU1372
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3pdue1, d3pdue2 - Chain 'F':
Compound: 3-hydroxyisobutyrate dehydrogenase family protein
Species: Geobacter sulfurreducens [TaxId:35554]
Gene: GSU1372
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3pduf1, d3pduf2 - Chain 'G':
Compound: 3-hydroxyisobutyrate dehydrogenase family protein
Species: Geobacter sulfurreducens [TaxId:35554]
Gene: GSU1372
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: 3-hydroxyisobutyrate dehydrogenase family protein
Species: Geobacter sulfurreducens [TaxId:35554]
Gene: GSU1372
Database cross-references and differences (RAF-indexed):
- Heterogens: NAP, GOL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>3pduA (A:)
mttygflglgimggpmaanlvragfdvtvwnrnpakcaplvalgarqasspaevcaacdi
tiamladpaaarevcfgangvlegigggrgyidmstvddetstaigaavtarggrfleap
vsgtkkpaedgtliilaagdqslftdagpafaalgkkclhlgevgqgarmklvvnmimgq
mmtalgegmalgrncgldggqllevldagamanpmfkgkgqmllsgefptsfplkhmqkd
lrlavelgdrlgqplhgaatanesfkraraaghadedfaavfrvlea
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3pduB (B:)
mttygflglgimggpmaanlvragfdvtvwnrnpakcaplvalgarqasspaevcaacdi
tiamladpaaarevcfgangvlegigggrgyidmstvddetstaigaavtarggrfleap
vsgtkkpaedgtliilaagdqslftdagpafaalgkkclhlgevgqgarmklvvnmimgq
mmtalgegmalgrncgldggqllevldagamanpmfkgkgqmllsgefptsfplkhmqkd
lrlavelgdrlgqplhgaatanesfkraraaghadedfaavfrvlea
Sequence, based on observed residues (ATOM records): (download)
>3pduB (B:)
ttygflglgimggpmaanlvragfdvtvwnrnpakcaplvalgarqasspaevcaacdit
iamladpaaarevcfgangvlegigggrgyidmstvddetstaigaavtarggrfleapv
sgtkkpaedgtliilaagdqslftdagpafaalgkkclhlgevgqgarmklvvnmimgqm
mtalgegmalgrncgldggqllevldagamanpmfkgkgqmllsgefptsfplkhmqkdl
rlavelgdrlgqplhgaatanesfkraraaghadedfaavfrvlea
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3pduC (C:)
mttygflglgimggpmaanlvragfdvtvwnrnpakcaplvalgarqasspaevcaacdi
tiamladpaaarevcfgangvlegigggrgyidmstvddetstaigaavtarggrfleap
vsgtkkpaedgtliilaagdqslftdagpafaalgkkclhlgevgqgarmklvvnmimgq
mmtalgegmalgrncgldggqllevldagamanpmfkgkgqmllsgefptsfplkhmqkd
lrlavelgdrlgqplhgaatanesfkraraaghadedfaavfrvlea
Sequence, based on observed residues (ATOM records): (download)
>3pduC (C:)
ttygflglgimggpmaanlvragfdvtvwnrnpakcaplvalgarqasspaevcaacdit
iamladpaaarevcfgangvlegigggrgyidmstvddetstaigaavtarggrfleapv
sgtkkpaedgtliilaagdqslftdagpafaalgkkclhlgevgqgarmklvvnmimgqm
mtalgegmalgrncgldggqllevldagamanpmfkgkgqmllsgefptsfplkhmqkdl
rlavelgdrlgqplhgaatanesfkraraaghadedfaavfrvlea
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>3pduD (D:)
mttygflglgimggpmaanlvragfdvtvwnrnpakcaplvalgarqasspaevcaacdi
tiamladpaaarevcfgangvlegigggrgyidmstvddetstaigaavtarggrfleap
vsgtkkpaedgtliilaagdqslftdagpafaalgkkclhlgevgqgarmklvvnmimgq
mmtalgegmalgrncgldggqllevldagamanpmfkgkgqmllsgefptsfplkhmqkd
lrlavelgdrlgqplhgaatanesfkraraaghadedfaavfrvlea
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>3pduE (E:)
mttygflglgimggpmaanlvragfdvtvwnrnpakcaplvalgarqasspaevcaacdi
tiamladpaaarevcfgangvlegigggrgyidmstvddetstaigaavtarggrfleap
vsgtkkpaedgtliilaagdqslftdagpafaalgkkclhlgevgqgarmklvvnmimgq
mmtalgegmalgrncgldggqllevldagamanpmfkgkgqmllsgefptsfplkhmqkd
lrlavelgdrlgqplhgaatanesfkraraaghadedfaavfrvlea
- Chain 'F':
Sequence, based on SEQRES records: (download)
>3pduF (F:)
mttygflglgimggpmaanlvragfdvtvwnrnpakcaplvalgarqasspaevcaacdi
tiamladpaaarevcfgangvlegigggrgyidmstvddetstaigaavtarggrfleap
vsgtkkpaedgtliilaagdqslftdagpafaalgkkclhlgevgqgarmklvvnmimgq
mmtalgegmalgrncgldggqllevldagamanpmfkgkgqmllsgefptsfplkhmqkd
lrlavelgdrlgqplhgaatanesfkraraaghadedfaavfrvlea
Sequence, based on observed residues (ATOM records): (download)
>3pduF (F:)
ttygflglgimggpmaanlvragfdvtvwnrnpakcaplvalgarqasspaevcaacdit
iamladpaaarevcfgangvlegigggrgyidmstvddetstaigaavtarggrfleapv
sgtkkpaedgtliilaagdqslftdagpafaalgkkclhlgevgqgarmklvvnmimgqm
mtalgegmalgrncgldggqllevldagamanpmfkgkgqmllsgefptsfplkhmqkdl
rlavelgdrlgqplhgaatanesfkraraaghadedfaavfrvlea
- Chain 'G':
No sequence available.
- Chain 'H':
No sequence available.