PDB entry 3pd5

View 3pd5 on RCSB PDB site
Description: Crystal structure of the editing domain of threonyl-tRNA synthetase from Pyrococcus abyssi in complex with an analog of threonyl-adenylate
Class: ligase
Keywords: alpha/beta fold, deacylase, editing, aminoacyl-tRNA synthetase, translation, LIGASE
Deposited on 2010-10-22, released 2010-12-08
The last revision prior to the SCOPe 2.08 freeze date was dated 2010-12-08, with a file datestamp of 2010-12-03.
Experiment type: XRAY
Resolution: 2.29 Å
R-factor: 0.222
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: threonyl-tRNA synthetase
    Species: Pyrococcus abyssi [TaxId:29292]
    Gene: PAB1490, PYRAB13430, thrS
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3pd5a_
  • Chain 'B':
    Compound: threonyl-tRNA synthetase
    Species: Pyrococcus abyssi [TaxId:29292]
    Gene: PAB1490, PYRAB13430, thrS
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3pd5b_
  • Heterogens: GOL, TSB, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3pd5A (A:)
mrvllihsdyieyevkdkalknpepisedmkrgrmeevlvafisvekvdeknpeevslka
ieeiskvaeqvkaenvfvypfahlsselakpsvamdilnrvyqglkergfnvgkapfgyy
kafkisckghplaelsrtivpeearve

    Sequence, based on observed residues (ATOM records): (download) 
    >3pd5A (A:)
mrvllihsdyieyevkdkalknpepisedmkrgrmeevlvafisvekvdeknpeevslka
ieeiskvaeqvkaenvfvypfahlsselakpsvamdilnrvyqglkergfnvgkapfgyy
kafkisckghplaelsrtivpe

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3pd5B (B:)
mrvllihsdyieyevkdkalknpepisedmkrgrmeevlvafisvekvdeknpeevslka
ieeiskvaeqvkaenvfvypfahlsselakpsvamdilnrvyqglkergfnvgkapfgyy
kafkisckghplaelsrtivpeearve