PDB entry 3p83

View 3p83 on RCSB PDB site
Description: Structure of the PCNA:RNase HII complex from Archaeoglobus fulgidus.
Class: hydrolase/DNA binding protein
Keywords: DNA clamp, RNase H fold, cleaves RNA/DNA hybrids, nucleus, HYDROLASE-DNA BINDING PROTEIN complex
Deposited on 2010-10-13, released 2011-02-02
The last revision prior to the SCOPe 2.05 freeze date was dated 2014-10-08, with a file datestamp of 2014-10-03.
Experiment type: XRAY
Resolution: 3.05 Å
R-factor: 0.188
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase sliding clamp
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Gene: pcn, AF_0335
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3p83a1, d3p83a2
  • Chain 'B':
    Compound: DNA polymerase sliding clamp
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Gene: pcn, AF_0335
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3p83b1, d3p83b2
  • Chain 'C':
    Compound: DNA polymerase sliding clamp
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Gene: pcn, AF_0335
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3p83c1, d3p83c2
  • Chain 'D':
    Compound: ribonuclease hii
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Gene: AF_0621, rnhB
    Database cross-references and differences (RAF-indexed):
    • Uniprot O29634 (12-216)
      • expression tag (4-11)
    Domains in SCOPe 2.05: d3p83d_
  • Chain 'E':
    Compound: ribonuclease hii
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Gene: AF_0621, rnhB
    Database cross-references and differences (RAF-indexed):
    • Uniprot O29634 (12-216)
      • expression tag (11)
    Domains in SCOPe 2.05: d3p83e_
  • Chain 'F':
    Compound: ribonuclease hii
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Gene: AF_0621, rnhB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3p83f_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3p83A (A:)
midvimtgellktvtraivalvsearihflekglhsravdpanvamvivdipkdsfevyn
ideektigvdmdrifdisksistkdlvelivedestlkvkfgsveykvalidpsairkep
ripelelpakivmdagefkkaiaaadkisdqvifrsdkegfrieakgdvdsivfhmtete
liefnggearsmfsvdylkefckvagsgdlltihlgtnypvrlvfelvggrakveyilap
riese

    Sequence, based on observed residues (ATOM records): (download) 
    >3p83A (A:)
midvimtgellktvtraivalvsearihflekglhsravdpanvamvivdipkdsfevyn
ideektigvdmdrifdisksistkdlvelivedestlkvkfgsveykvalidpsairkep
ripelelpakivmdagefkkaiaaadkisdqvifrsdkegfrieakgdvdsivfhmtete
liefnggearsmfsvdylkefckvagsgdlltihlgtnypvrlvfelvggrakveyilap
ries

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3p83B (B:)
midvimtgellktvtraivalvsearihflekglhsravdpanvamvivdipkdsfevyn
ideektigvdmdrifdisksistkdlvelivedestlkvkfgsveykvalidpsairkep
ripelelpakivmdagefkkaiaaadkisdqvifrsdkegfrieakgdvdsivfhmtete
liefnggearsmfsvdylkefckvagsgdlltihlgtnypvrlvfelvggrakveyilap
riese

    Sequence, based on observed residues (ATOM records): (download) 
    >3p83B (B:)
midvimtgellktvtraivalvsearihflekglhsravdpanvamvivdipkdsfevyn
ideektigvdmdrifdisksistkdlvelivedestlkvkfgsveykvalidpsairkep
ripelelpakivmdagefkkaiaaadkisdqvifrsdkegfrieakgdvdsivfhmtete
liefnggearsmfsvdylkefckvagsgdlltihlgtnypvrlvfelvggrakveyilap
ries

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3p83C (C:)
midvimtgellktvtraivalvsearihflekglhsravdpanvamvivdipkdsfevyn
ideektigvdmdrifdisksistkdlvelivedestlkvkfgsveykvalidpsairkep
ripelelpakivmdagefkkaiaaadkisdqvifrsdkegfrieakgdvdsivfhmtete
liefnggearsmfsvdylkefckvagsgdlltihlgtnypvrlvfelvggrakveyilap
riese

    Sequence, based on observed residues (ATOM records): (download) 
    >3p83C (C:)
midvimtgellktvtraivalvsearihflekglhsravdpanvamvivdipkdsfevyn
ideektigvdmdrifdisksistkdlvelivedestlkvkfgsveykvalidpsairkep
ripelelpakivmdagefkkaiaaadkisdqvifrsdkegfrieakgdvdsivfhmtete
liefnggearsmfsvdylkefckvagsgdlltihlgtnypvrlvfelvggrakveyilap
rie

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3p83D (D:)
gplgspefpgrlmkagideagkgcvigplvvagvacsdedrlrklgvkdskklsqgrree
laeeirkicrtevlkvspenldermaaktineilkecyaeiilrlkpeiayvdspdvipe
rlsreleeitglrvvaehkadekyplvaaasiiakverereierlkekfgdfgsgyasdp
rtrevlkewiasgripscvrmrwktvsnlrqktlddf

    Sequence, based on observed residues (ATOM records): (download) 
    >3p83D (D:)
spefpgrlmkagideagkgcvigplvvagvacsdedrlrklgvkdskklsqgrreelaee
irkicrtevlkvspenldermaaktineilkecyaeiilrlkpeiayvdspdviperlsr
eleeitglrvvaehkadekyplvaaasiiakverereierlkekfgdfgsgyasdprtre
vlkewiasgripscvrmrwktvsnlrqktlddf

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3p83E (E:)
gplgspefpgrlmkagideagkgcvigplvvagvacsdedrlrklgvkdskklsqgrree
laeeirkicrtevlkvspenldermaaktineilkecyaeiilrlkpeiayvdspdvipe
rlsreleeitglrvvaehkadekyplvaaasiiakverereierlkekfgdfgsgyasdp
rtrevlkewiasgripscvrmrwktvsnlrqktlddf

    Sequence, based on observed residues (ATOM records): (download) 
    >3p83E (E:)
lmkagideagkgcvigplvvagvacsdedrlrklgvkdskklsqgrreelaeeirkicrt
evlkvspenldermaaktineilkecyaeiilrlkpeiayvdspdviperlsreleeitg
lrvvaehkadekyplvaaasiiakverereierlkekfgdfgsgyasdprtrevlkewia
sgripscvrmrwklrqktlddf

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3p83F (F:)
gplgspefpgrlmkagideagkgcvigplvvagvacsdedrlrklgvkdskklsqgrree
laeeirkicrtevlkvspenldermaaktineilkecyaeiilrlkpeiayvdspdvipe
rlsreleeitglrvvaehkadekyplvaaasiiakverereierlkekfgdfgsgyasdp
rtrevlkewiasgripscvrmrwktvsnlrqktlddf

    Sequence, based on observed residues (ATOM records): (download) 
    >3p83F (F:)
mkagideagkgcvigplvvagvacsdedrlrklgvkdskklsqgrreelaeeirkicrte
vlkvspenldermaaktineilkecyaeiilrlkpeiayvdspdviperlsreleeitgl
rvvaehkadekyplvaaasiiakverereierlkekfgdfgsgyasdprtrevlkewias
gripscvrmrwktvsnlrqktlddf