PDB entry 3p77

View 3p77 on RCSB PDB site
Description: Crystal Structures of the Chicken YF1*7.1 molecule
Class: immune system
Keywords: ig-like c1-type (immunoglobulin-like) domain, histocompatibility antigen, immune system
Deposited on 2010-10-12, released 2010-11-24
The last revision prior to the SCOPe 2.06 freeze date was dated 2010-12-22, with a file datestamp of 2010-12-17.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: 0.176
AEROSPACI score: 0.6 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: MHC Rfp-Y class I alpha chain
    Species: Gallus gallus [TaxId:9031]
    Gene: YFV
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9BCW3 (Start-274)
      • conflict (1)
    Domains in SCOPe 2.06: d3p77a1, d3p77a2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Gallus gallus [TaxId:9031]
    Gene: B2M
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3p77b_
  • Heterogens: ACT, PGE, 2PE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3p77A (A:)
    efgshslryfltgmtdpgpgmprfvivgyvddkifgtynsksrtaqpivemlpqedqehw
    dtqtqkaqggerdfdwnlnrlperynkskgshtmqmmfgcdiledgsirgydqyafdgrd
    flafdmdtmtftaadpvaeitkrrwetegtyaerwkhelgtvcvqnlrrylehgkaalkr
    rvqpevrvwgkeadgiltlschahgfyprpitiswmkdgmvrdqetrwggivpnsdgtyh
    asaaidvlpedgdkywcrvehaslpqpglfswepq
    

    Sequence, based on observed residues (ATOM records): (download)
    >3p77A (A:)
    fgshslryfltgmtdpgpgmprfvivgyvddkifgtynsksrtaqpivemlpqedqehwd
    tqtqkaqggerdfdwnlnrlperynkgshtmqmmfgcdiledgsirgydqyafdgrdfla
    fdmdtmtftaadpvaeitkrrwetegtyaerwkhelgtvcvqnlrrylehgkaalkrrvq
    pevrvwgkeadgiltlschahgfyprpitiswmkdgmvrdqetrwggivpnsdgtyhasa
    aidvlpedgdkywcrvehaslpqpglfswepq
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3p77B (B:)
    adltpkvqvysrfpasagtknvlncfaagfhppkisitlmkdgvpmegaqysdmsfnddw
    tfqrlvhadftpssgstyackvehetlkepqvykwdpef