PDB entry 3p05

View 3p05 on RCSB PDB site
Description: X-ray structure of pentameric HIV-1 CA
Class: viral protein
Keywords: capsid protein, VIRAL PROTEIN
Deposited on 2010-09-27, released 2011-01-12
The last revision prior to the SCOPe 2.03 freeze date was dated 2011-03-16, with a file datestamp of 2011-03-11.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.232
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: hiv-1 ca
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Gene: CA, gag
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q72497 (0-End)
      • engineered mutation (20-21)
      • engineered mutation (183-184)
  • Chain 'B':
    Compound: hiv-1 ca
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Gene: CA, gag
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q72497 (0-End)
      • engineered mutation (20-21)
      • engineered mutation (183-184)
    Domains in SCOPe 2.03: d3p05b1, d3p05b2
  • Chain 'C':
    Compound: hiv-1 ca
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Gene: CA, gag
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q72497 (0-End)
      • engineered mutation (20-21)
      • engineered mutation (183-184)
    Domains in SCOPe 2.03: d3p05c1, d3p05c2
  • Chain 'D':
    Compound: hiv-1 ca
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Gene: CA, gag
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q72497 (0-End)
      • engineered mutation (20-21)
      • engineered mutation (183-184)
    Domains in SCOPe 2.03: d3p05d1
  • Chain 'E':
    Compound: hiv-1 ca
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Gene: CA, gag
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q72497 (0-End)
      • engineered mutation (20-21)
      • engineered mutation (183-184)
  • Heterogens: IOD

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3p05B (B:)
pivqnlqgqmvhqaisprtlccwvkvveekafspevipmfsalsegatpqdlntmlntvg
ghqaamqmlketineeaaewdrlhpvhagpiapgqmreprgsdiagttstlqeqigwmth
nppipvgeiykrwiilglnkivrmysptsildirqgpkepfrdyvdrfyktlraeqasqe
vknaatetllvqnanpdcktilkalgpgatleemmtacqgvggpghkarvl

    Sequence, based on observed residues (ATOM records): (download) 
    >3p05B (B:)
pivqnlqgqmvhqaisprtlccwvkvveekafspevipmfsalsegatpqdlntmlntvg
ghqaamqmlketineeaaewdrlhpmreprgsdiagttstlqeqigwmthnppipvgeiy
krwiilglnkivrmysptsildirqgpkepfrdyvdrfyktlraeqasqevknaatetll
vqnanpdcktilkalgpgatleemmtacq

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3p05C (C:)
pivqnlqgqmvhqaisprtlccwvkvveekafspevipmfsalsegatpqdlntmlntvg
ghqaamqmlketineeaaewdrlhpvhagpiapgqmreprgsdiagttstlqeqigwmth
nppipvgeiykrwiilglnkivrmysptsildirqgpkepfrdyvdrfyktlraeqasqe
vknaatetllvqnanpdcktilkalgpgatleemmtacqgvggpghkarvl

    Sequence, based on observed residues (ATOM records): (download) 
    >3p05C (C:)
pivqnlqgqmvhqaisprtlccwvkvveekafspevipmfsalsegatpqdlntmlntvg
ghqaamqmlketineeaaewdrlhpmreprgsdiagttstlqeqigwmthnppipvgeiy
krwiilglnkivrmysptsildirqgpkepfrdyvdrfyktlraeqasqevknaatetll
vqnanpdcktilkalgpgatleemmtacq

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3p05D (D:)
pivqnlqgqmvhqaisprtlccwvkvveekafspevipmfsalsegatpqdlntmlntvg
ghqaamqmlketineeaaewdrlhpvhagpiapgqmreprgsdiagttstlqeqigwmth
nppipvgeiykrwiilglnkivrmysptsildirqgpkepfrdyvdrfyktlraeqasqe
vknaatetllvqnanpdcktilkalgpgatleemmtacqgvggpghkarvl

    Sequence, based on observed residues (ATOM records): (download) 
    >3p05D (D:)
pivqnqmvhqaisprtlccwvkvveekafspevipmfsalsegatpqdlntmlntvgghq
aamqmlketineeaaewdrlhpmreprgsdiagttstlqeqigwmthnppipvgeiykrw
iilglnkivrmysptsildirqgpkepfrdyvdrfyktlraeqasqevknaatetllvqn
anpdcktilkalgpgatleemmtacq

  • Chain 'E':
    No sequence available.