PDB entry 3ooh

View 3ooh on RCSB PDB site
Description: Crystal structure of E. Coli purine nucleoside phosphorylase with PO4
Class: transferase
Keywords: Purine nucleoside phosphorylase, phosphorylase, TRANSFERASE
Deposited on 2010-08-31, released 2011-07-13
The last revision prior to the SCOPe 2.07 freeze date was dated 2013-08-14, with a file datestamp of 2013-08-09.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: 0.165
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Escherichia coli [TaxId:83333]
    Gene: deoD, EcDH1_3614
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ooha_
  • Chain 'B':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Escherichia coli [TaxId:83333]
    Gene: deoD, EcDH1_3614
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3oohb_
  • Chain 'C':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Escherichia coli [TaxId:83333]
    Gene: deoD, EcDH1_3614
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3oohc_
  • Chain 'D':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Escherichia coli [TaxId:83333]
    Gene: deoD, EcDH1_3614
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3oohd_
  • Chain 'E':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Escherichia coli [TaxId:83333]
    Gene: deoD, EcDH1_3614
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3oohe_
  • Chain 'F':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Escherichia coli [TaxId:83333]
    Gene: deoD, EcDH1_3614
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3oohf_
  • Chain 'G':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Escherichia coli [TaxId:83333]
    Gene: deoD, EcDH1_3614
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3oohg_
  • Chain 'H':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Escherichia coli [TaxId:83333]
    Gene: deoD, EcDH1_3614
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3oohh_
  • Chain 'I':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Escherichia coli [TaxId:83333]
    Gene: deoD, EcDH1_3614
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3oohi_
  • Chain 'J':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Escherichia coli [TaxId:83333]
    Gene: deoD, EcDH1_3614
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3oohj_
  • Chain 'K':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Escherichia coli [TaxId:83333]
    Gene: deoD, EcDH1_3614
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3oohk_
  • Chain 'L':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Escherichia coli [TaxId:83333]
    Gene: deoD, EcDH1_3614
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3oohl_
  • Chain 'M':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Escherichia coli [TaxId:83333]
    Gene: deoD, EcDH1_3614
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3oohm_
  • Chain 'N':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Escherichia coli [TaxId:83333]
    Gene: deoD, EcDH1_3614
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3oohn_
  • Chain 'O':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Escherichia coli [TaxId:83333]
    Gene: deoD, EcDH1_3614
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ooho_
  • Chain 'P':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Escherichia coli [TaxId:83333]
    Gene: deoD, EcDH1_3614
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3oohp_
  • Chain 'Q':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Escherichia coli [TaxId:83333]
    Gene: deoD, EcDH1_3614
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3oohq_
  • Chain 'R':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Escherichia coli [TaxId:83333]
    Gene: deoD, EcDH1_3614
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3oohr_
  • Heterogens: PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3oohA (A:)
atphinaemgdfadvvlmpgdplrakyiaetfledarevnnvrgmlgftgtykgrkisvm
ghgmgipscsiytkelitdfgvkkiirvgscgavlphvklrdvvigmgactdskvnrirf
kdhdfaaiadfdmvrnavdaakalgidarvgnlfsadlfyspdgemfdvmekygilgvem
eaagiygvaaefgakaltictvsdhirtheqttaaerqttfndmikialesvllgdk

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3oohB (B:)
atphinaemgdfadvvlmpgdplrakyiaetfledarevnnvrgmlgftgtykgrkisvm
ghgmgipscsiytkelitdfgvkkiirvgscgavlphvklrdvvigmgactdskvnrirf
kdhdfaaiadfdmvrnavdaakalgidarvgnlfsadlfyspdgemfdvmekygilgvem
eaagiygvaaefgakaltictvsdhirtheqttaaerqttfndmikialesvllgdk

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3oohC (C:)
atphinaemgdfadvvlmpgdplrakyiaetfledarevnnvrgmlgftgtykgrkisvm
ghgmgipscsiytkelitdfgvkkiirvgscgavlphvklrdvvigmgactdskvnrirf
kdhdfaaiadfdmvrnavdaakalgidarvgnlfsadlfyspdgemfdvmekygilgvem
eaagiygvaaefgakaltictvsdhirtheqttaaerqttfndmikialesvllgdk

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3oohD (D:)
atphinaemgdfadvvlmpgdplrakyiaetfledarevnnvrgmlgftgtykgrkisvm
ghgmgipscsiytkelitdfgvkkiirvgscgavlphvklrdvvigmgactdskvnrirf
kdhdfaaiadfdmvrnavdaakalgidarvgnlfsadlfyspdgemfdvmekygilgvem
eaagiygvaaefgakaltictvsdhirtheqttaaerqttfndmikialesvllgdk

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3oohE (E:)
atphinaemgdfadvvlmpgdplrakyiaetfledarevnnvrgmlgftgtykgrkisvm
ghgmgipscsiytkelitdfgvkkiirvgscgavlphvklrdvvigmgactdskvnrirf
kdhdfaaiadfdmvrnavdaakalgidarvgnlfsadlfyspdgemfdvmekygilgvem
eaagiygvaaefgakaltictvsdhirtheqttaaerqttfndmikialesvllgdk

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3oohF (F:)
atphinaemgdfadvvlmpgdplrakyiaetfledarevnnvrgmlgftgtykgrkisvm
ghgmgipscsiytkelitdfgvkkiirvgscgavlphvklrdvvigmgactdskvnrirf
kdhdfaaiadfdmvrnavdaakalgidarvgnlfsadlfyspdgemfdvmekygilgvem
eaagiygvaaefgakaltictvsdhirtheqttaaerqttfndmikialesvllgdk

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3oohG (G:)
atphinaemgdfadvvlmpgdplrakyiaetfledarevnnvrgmlgftgtykgrkisvm
ghgmgipscsiytkelitdfgvkkiirvgscgavlphvklrdvvigmgactdskvnrirf
kdhdfaaiadfdmvrnavdaakalgidarvgnlfsadlfyspdgemfdvmekygilgvem
eaagiygvaaefgakaltictvsdhirtheqttaaerqttfndmikialesvllgdk

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3oohH (H:)
atphinaemgdfadvvlmpgdplrakyiaetfledarevnnvrgmlgftgtykgrkisvm
ghgmgipscsiytkelitdfgvkkiirvgscgavlphvklrdvvigmgactdskvnrirf
kdhdfaaiadfdmvrnavdaakalgidarvgnlfsadlfyspdgemfdvmekygilgvem
eaagiygvaaefgakaltictvsdhirtheqttaaerqttfndmikialesvllgdk

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3oohI (I:)
atphinaemgdfadvvlmpgdplrakyiaetfledarevnnvrgmlgftgtykgrkisvm
ghgmgipscsiytkelitdfgvkkiirvgscgavlphvklrdvvigmgactdskvnrirf
kdhdfaaiadfdmvrnavdaakalgidarvgnlfsadlfyspdgemfdvmekygilgvem
eaagiygvaaefgakaltictvsdhirtheqttaaerqttfndmikialesvllgdk

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3oohJ (J:)
atphinaemgdfadvvlmpgdplrakyiaetfledarevnnvrgmlgftgtykgrkisvm
ghgmgipscsiytkelitdfgvkkiirvgscgavlphvklrdvvigmgactdskvnrirf
kdhdfaaiadfdmvrnavdaakalgidarvgnlfsadlfyspdgemfdvmekygilgvem
eaagiygvaaefgakaltictvsdhirtheqttaaerqttfndmikialesvllgdk

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3oohK (K:)
atphinaemgdfadvvlmpgdplrakyiaetfledarevnnvrgmlgftgtykgrkisvm
ghgmgipscsiytkelitdfgvkkiirvgscgavlphvklrdvvigmgactdskvnrirf
kdhdfaaiadfdmvrnavdaakalgidarvgnlfsadlfyspdgemfdvmekygilgvem
eaagiygvaaefgakaltictvsdhirtheqttaaerqttfndmikialesvllgdk

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3oohL (L:)
atphinaemgdfadvvlmpgdplrakyiaetfledarevnnvrgmlgftgtykgrkisvm
ghgmgipscsiytkelitdfgvkkiirvgscgavlphvklrdvvigmgactdskvnrirf
kdhdfaaiadfdmvrnavdaakalgidarvgnlfsadlfyspdgemfdvmekygilgvem
eaagiygvaaefgakaltictvsdhirtheqttaaerqttfndmikialesvllgdk

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3oohM (M:)
atphinaemgdfadvvlmpgdplrakyiaetfledarevnnvrgmlgftgtykgrkisvm
ghgmgipscsiytkelitdfgvkkiirvgscgavlphvklrdvvigmgactdskvnrirf
kdhdfaaiadfdmvrnavdaakalgidarvgnlfsadlfyspdgemfdvmekygilgvem
eaagiygvaaefgakaltictvsdhirtheqttaaerqttfndmikialesvllgdk

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3oohN (N:)
atphinaemgdfadvvlmpgdplrakyiaetfledarevnnvrgmlgftgtykgrkisvm
ghgmgipscsiytkelitdfgvkkiirvgscgavlphvklrdvvigmgactdskvnrirf
kdhdfaaiadfdmvrnavdaakalgidarvgnlfsadlfyspdgemfdvmekygilgvem
eaagiygvaaefgakaltictvsdhirtheqttaaerqttfndmikialesvllgdk

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3oohO (O:)
atphinaemgdfadvvlmpgdplrakyiaetfledarevnnvrgmlgftgtykgrkisvm
ghgmgipscsiytkelitdfgvkkiirvgscgavlphvklrdvvigmgactdskvnrirf
kdhdfaaiadfdmvrnavdaakalgidarvgnlfsadlfyspdgemfdvmekygilgvem
eaagiygvaaefgakaltictvsdhirtheqttaaerqttfndmikialesvllgdk

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3oohP (P:)
atphinaemgdfadvvlmpgdplrakyiaetfledarevnnvrgmlgftgtykgrkisvm
ghgmgipscsiytkelitdfgvkkiirvgscgavlphvklrdvvigmgactdskvnrirf
kdhdfaaiadfdmvrnavdaakalgidarvgnlfsadlfyspdgemfdvmekygilgvem
eaagiygvaaefgakaltictvsdhirtheqttaaerqttfndmikialesvllgdk

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3oohQ (Q:)
atphinaemgdfadvvlmpgdplrakyiaetfledarevnnvrgmlgftgtykgrkisvm
ghgmgipscsiytkelitdfgvkkiirvgscgavlphvklrdvvigmgactdskvnrirf
kdhdfaaiadfdmvrnavdaakalgidarvgnlfsadlfyspdgemfdvmekygilgvem
eaagiygvaaefgakaltictvsdhirtheqttaaerqttfndmikialesvllgdk

  • Chain 'R':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3oohR (R:)
atphinaemgdfadvvlmpgdplrakyiaetfledarevnnvrgmlgftgtykgrkisvm
ghgmgipscsiytkelitdfgvkkiirvgscgavlphvklrdvvigmgactdskvnrirf
kdhdfaaiadfdmvrnavdaakalgidarvgnlfsadlfyspdgemfdvmekygilgvem
eaagiygvaaefgakaltictvsdhirtheqttaaerqttfndmikialesvllgdk