PDB entry 3ol2

View 3ol2 on RCSB PDB site
Description: Receptor-ligand structure of Human Semaphorin 4D with Plexin B1.
Class: signaling protein
Keywords: Beta-Propeller, Signalling, Extacellular, SIGNALING PROTEIN
Deposited on 2010-08-25, released 2010-10-13
The last revision prior to the SCOPe 2.05 freeze date was dated 2011-01-05, with a file datestamp of 2010-12-31.
Experiment type: XRAY
Resolution: 2.99 Å
R-factor: 0.192
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Semaphorin-4D
    Species: Homo sapiens [TaxId:9606]
    Gene: SEMA4D, C9orf164, CD100, SEMAJ
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3ol2a1, d3ol2a2, d3ol2a3
  • Chain 'B':
    Compound: Plexin-B1
    Species: Homo sapiens [TaxId:9606]
    Gene: PLXNB1, KIAA0407, PLXN5, SEP
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NAG

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3ol2A (A:)
mafapipritwehrevhlvqfhepdiynysalllsedkdtlyigareavfavnalnisek
qhevywkvsedkkakcaekgkskqteclnyirvlqplsatslyvcgtnafqpacdhlnlt
sfkflgknedgkgrcpfdpahsytsvmvdgelysgtsynflgsepiisrnsshsplrtey
aipwlnepsfvfadvirkspdspdgeddrvyffftevsveyefvfrvlipriarvckgdq
gglrtlqkkwtsflkarlicsrpdsglvfnvlrdvfvlrspglkvpvfyalftpqlnnvg
lsavcaynlstaeevfshgkymqsttveqshtkwvryngpvpkprpgacidsearaanyt
sslnlpdktlqfvkdhplmddsvtpidnrprlikkdvnytqivvdrtqaldgtvydvmfv
stdrgalhkaislehavhiieetqlfqdfepvqtlllsskkgnrfvyagsnsgvvqapla
fcgkhgtcedcvlardpycawspptatcvalhqtespsrgliqemsgdasvcpdkskgsy
rqhffkhggtaelkcsqksnlarvfwkfqngvlkaespkyglmgrknllifnlsegdsgv
yqclseervknktvfqvvakhvlevkvvpkpvvaptlsvvqtegsriatkvlvastkhhh
hhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3ol2A (A:)
fapipritwehrevhlvqfhepdiynysalllsedkdtlyigareavfavnalnisekqh
evywkvsedkkakcaekgkskqteclnyirvlqplsatslyvcgtnafqpacdhlnltsf
kflgknedgkgrcpfdpahsytsvmvdgelysgtsynflgsepiisrnsshsplrteyai
pwlnepsfvfadvirkgeddrvyffftevsveyefvfrvlipriarvckgdqgglrtlqk
kwtsflkarlicsrpdsglvfnvlrdvfvlrspglkvpvfyalftpqlnnvglsavcayn
lstaeevfshgkymqsttveqshtkwvryngpvpkprpgacidsearaanytsslnlpdk
tlqfvkdhplmddsvtpidnrprlikkdvnytqivvdrtqaldgtvydvmfvstdrgalh
kaislehavhiieetqlfqdfepvqtlllsskkgnrfvyagsnsgvvqaplafcgkhgtc
edcvlardpycawspptatcvalhqtespsrgliqemsgdasvcpdyrqhffkhggtael
kcsqksnlarvfwkfqngvlkaespkyglmgrknllifnlsegdsgvyqclseervknkt
vfqvvakhvlevkv

  • Chain 'B':
    No sequence available.