PDB entry 3oko

View 3oko on RCSB PDB site
Description: Crystal structure of S25-39 in complex with Kdo(2.8)Kdo(2.4)Kdo
Class: immune system
Keywords: antibody, Fab, IgG, carbohydrate, IMMUNE SYSTEM
Deposited on 2010-08-25, released 2011-04-06
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-05-04, with a file datestamp of 2011-05-06.
Experiment type: XRAY
Resolution: 2.45 Å
R-factor: 0.213
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: S25-39 Fab (IgG1k) heavy chain
    Species: Mus musculus [TaxId:10090]
    Gene:
    Database cross-references and differences (RAF-indexed):
    • PDB 3OKO (0-End)
    Domains in SCOPe 2.07: d3okoa1, d3okoa2
  • Chain 'B':
    Compound: S25-39 Fab (IgG1k) light chain
    Species: Mus musculus [TaxId:10090]
    Gene:
    Database cross-references and differences (RAF-indexed):
    • PDB 3OKO (0-221)
  • Heterogens: ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3okoA (A:)
    divmtqspsslavsagekvtmnckssqsllnsrtrknylawyqqkpgqspklliywastr
    esgvpdrftgsgsgtdfaltissvqaedlavyyckqsynlrtfgggtkleikradaaptv
    sifppsseqltsggasvvcflnnfypkdinvkwkidgserangvlnswtdqdskdstysm
    tstltltkdeyerhnsytceashktstspivksfnrnec
    

    Sequence, based on observed residues (ATOM records): (download)
    >3okoA (A:)
    divmtqspsslavsagekvtmnckssqsllnsrtrknylawyqqkpgqspklliywastr
    esgvpdrftgsgsgtdfaltissvqaedlavyyckqsynlrtfgggtkleikradaaptv
    sifppsseqltsggasvvcflnnfypkdinvkwkidgserangvlnswtdqdskdstysm
    tstltltkdeyerhnsytceashktstspivksfnrn
    

  • Chain 'B':
    No sequence available.