PDB entry 3of3

View 3of3 on RCSB PDB site
Description: Crystal structure of PNP with an inhibitor DADME_immH from Vibrio cholerae
Class: transferase
Keywords: Structural Genomics, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC, phophoryl transferase, purine nucleosides, phosphate, TRANSFERASE
Deposited on 2010-08-13, released 2010-09-01
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-02-10, with a file datestamp of 2021-02-05.
Experiment type: XRAY
Resolution: 1.83 Å
R-factor: N/A
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Purine nucleoside phosphorylase deoD-type 1
    Species: Vibrio cholerae [TaxId:666]
    Gene: deoD, deoD1, VC_2347
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3of3a_
  • Chain 'B':
    Compound: Purine nucleoside phosphorylase deoD-type 1
    Species: Vibrio cholerae [TaxId:666]
    Gene: deoD, deoD1, VC_2347
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3of3b_
  • Chain 'C':
    Compound: Purine nucleoside phosphorylase deoD-type 1
    Species: Vibrio cholerae [TaxId:666]
    Gene: deoD, deoD1, VC_2347
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3of3c_
  • Chain 'D':
    Compound: Purine nucleoside phosphorylase deoD-type 1
    Species: Vibrio cholerae [TaxId:666]
    Gene: deoD, deoD1, VC_2347
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3of3d_
  • Chain 'E':
    Compound: Purine nucleoside phosphorylase deoD-type 1
    Species: Vibrio cholerae [TaxId:666]
    Gene: deoD, deoD1, VC_2347
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3of3e_
  • Chain 'F':
    Compound: Purine nucleoside phosphorylase deoD-type 1
    Species: Vibrio cholerae [TaxId:666]
    Gene: deoD, deoD1, VC_2347
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3of3f_
  • Chain 'G':
    Compound: Purine nucleoside phosphorylase deoD-type 1
    Species: Vibrio cholerae [TaxId:666]
    Gene: deoD, deoD1, VC_2347
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3of3g_
  • Chain 'H':
    Compound: Purine nucleoside phosphorylase deoD-type 1
    Species: Vibrio cholerae [TaxId:666]
    Gene: deoD, deoD1, VC_2347
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3of3h_
  • Chain 'I':
    Compound: Purine nucleoside phosphorylase deoD-type 1
    Species: Vibrio cholerae [TaxId:666]
    Gene: deoD, deoD1, VC_2347
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3of3i_
  • Chain 'J':
    Compound: Purine nucleoside phosphorylase deoD-type 1
    Species: Vibrio cholerae [TaxId:666]
    Gene: deoD, deoD1, VC_2347
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3of3j_
  • Chain 'K':
    Compound: Purine nucleoside phosphorylase deoD-type 1
    Species: Vibrio cholerae [TaxId:666]
    Gene: deoD, deoD1, VC_2347
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3of3k_
  • Chain 'L':
    Compound: Purine nucleoside phosphorylase deoD-type 1
    Species: Vibrio cholerae [TaxId:666]
    Gene: deoD, deoD1, VC_2347
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3of3l_
  • Heterogens: DIH, PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3of3A (A:)
    matphinaqmgdfadvvlmpgdplrakyiaenfldnavqvcdvrnmfgytgtykgrkisv
    mghgmgipscsiyvtelikdygvkkiirvgscgavnegikvrdvvigmgactdskvnrir
    fkdhdfaaiadykmvkaaeeaakargidvkvgnlfsaelfytpdpsmfdvmdkygivgve
    meaagiygvaaeygakalaictvsdhiktgeqttseerqntfnemieialdsvligdqag
    y
    

    Sequence, based on observed residues (ATOM records): (download)
    >3of3A (A:)
    atphinaqmgdfadvvlmpgdplrakyiaenfldnavqvcdvrnmfgytgtykgrkisvm
    ghgmgipscsiyvtelikdygvkkiirvgscgavnegikvrdvvigmgactdskvnrirf
    kdhdfaaiadykmvkaaeeaakargidvkvgnlfsaelfytpdpsmfdvmdkygivgvem
    eaagiygvaaeygakalaictvsdhiktgeqttseerqntfnemieialdsvligdqagy
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3of3B (B:)
    matphinaqmgdfadvvlmpgdplrakyiaenfldnavqvcdvrnmfgytgtykgrkisv
    mghgmgipscsiyvtelikdygvkkiirvgscgavnegikvrdvvigmgactdskvnrir
    fkdhdfaaiadykmvkaaeeaakargidvkvgnlfsaelfytpdpsmfdvmdkygivgve
    meaagiygvaaeygakalaictvsdhiktgeqttseerqntfnemieialdsvligdqag
    y
    

    Sequence, based on observed residues (ATOM records): (download)
    >3of3B (B:)
    atphinaqmgdfadvvlmpgdplrakyiaenfldnavqvcdvrnmfgytgtykgrkisvm
    ghgmgipscsiyvtelikdygvkkiirvgscgavnegikvrdvvigmgactdskvnrirf
    kdhdfaaiadykmvkaaeeaakargidvkvgnlfsaelfytpdpsmfdvmdkygivgvem
    eaagiygvaaeygakalaictvsdhiktgeqttseerqntfnemieialdsvligdqagy
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3of3C (C:)
    matphinaqmgdfadvvlmpgdplrakyiaenfldnavqvcdvrnmfgytgtykgrkisv
    mghgmgipscsiyvtelikdygvkkiirvgscgavnegikvrdvvigmgactdskvnrir
    fkdhdfaaiadykmvkaaeeaakargidvkvgnlfsaelfytpdpsmfdvmdkygivgve
    meaagiygvaaeygakalaictvsdhiktgeqttseerqntfnemieialdsvligdqag
    y
    

    Sequence, based on observed residues (ATOM records): (download)
    >3of3C (C:)
    atphinaqmgdfadvvlmpgdplrakyiaenfldnavqvcdvrnmfgytgtykgrkisvm
    ghgmgipscsiyvtelikdygvkkiirvgscgavnegikvrdvvigmgactdskvnrirf
    kdhdfaaiadykmvkaaeeaakargidvkvgnlfsaelfytpdpsmfdvmdkygivgvem
    eaagiygvaaeygakalaictvsdhiktgeqttseerqntfnemieialdsvligdqagy
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3of3D (D:)
    matphinaqmgdfadvvlmpgdplrakyiaenfldnavqvcdvrnmfgytgtykgrkisv
    mghgmgipscsiyvtelikdygvkkiirvgscgavnegikvrdvvigmgactdskvnrir
    fkdhdfaaiadykmvkaaeeaakargidvkvgnlfsaelfytpdpsmfdvmdkygivgve
    meaagiygvaaeygakalaictvsdhiktgeqttseerqntfnemieialdsvligdqag
    y
    

    Sequence, based on observed residues (ATOM records): (download)
    >3of3D (D:)
    atphinaqmgdfadvvlmpgdplrakyiaenfldnavqvcdvrnmfgytgtykgrkisvm
    ghgmgipscsiyvtelikdygvkkiirvgscgavnegikvrdvvigmgactdskvnrirf
    kdhdfaaiadykmvkaaeeaakargidvkvgnlfsaelfytpdpsmfdvmdkygivgvem
    eaagiygvaaeygakalaictvsdhiktgeqttseerqntfnemieialdsvligdqa
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >3of3E (E:)
    matphinaqmgdfadvvlmpgdplrakyiaenfldnavqvcdvrnmfgytgtykgrkisv
    mghgmgipscsiyvtelikdygvkkiirvgscgavnegikvrdvvigmgactdskvnrir
    fkdhdfaaiadykmvkaaeeaakargidvkvgnlfsaelfytpdpsmfdvmdkygivgve
    meaagiygvaaeygakalaictvsdhiktgeqttseerqntfnemieialdsvligdqag
    y
    

    Sequence, based on observed residues (ATOM records): (download)
    >3of3E (E:)
    atphinaqmgdfadvvlmpgdplrakyiaenfldnavqvcdvrnmfgytgtykgrkisvm
    ghgmgipscsiyvtelikdygvkkiirvgscgavnegikvrdvvigmgactdskvnrirf
    kdhdfaaiadykmvkaaeeaakargidvkvgnlfsaelfytpdpsmfdvmdkygivgvem
    eaagiygvaaeygakalaictvsdhiktgeqttseerqntfnemieialdsvligdqagy
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >3of3F (F:)
    matphinaqmgdfadvvlmpgdplrakyiaenfldnavqvcdvrnmfgytgtykgrkisv
    mghgmgipscsiyvtelikdygvkkiirvgscgavnegikvrdvvigmgactdskvnrir
    fkdhdfaaiadykmvkaaeeaakargidvkvgnlfsaelfytpdpsmfdvmdkygivgve
    meaagiygvaaeygakalaictvsdhiktgeqttseerqntfnemieialdsvligdqag
    y
    

    Sequence, based on observed residues (ATOM records): (download)
    >3of3F (F:)
    atphinaqmgdfadvvlmpgdplrakyiaenfldnavqvcdvrnmfgytgtykgrkisvm
    ghgmgipscsiyvtelikdygvkkiirvgscgavnegikvrdvvigmgactdskvnrirf
    kdhdfaaiadykmvkaaeeaakargidvkvgnlfsaelfytpdpsmfdvmdkygivgvem
    eaagiygvaaeygakalaictvsdhiktgeqttseerqntfnemieialdsvligdqagy
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >3of3G (G:)
    matphinaqmgdfadvvlmpgdplrakyiaenfldnavqvcdvrnmfgytgtykgrkisv
    mghgmgipscsiyvtelikdygvkkiirvgscgavnegikvrdvvigmgactdskvnrir
    fkdhdfaaiadykmvkaaeeaakargidvkvgnlfsaelfytpdpsmfdvmdkygivgve
    meaagiygvaaeygakalaictvsdhiktgeqttseerqntfnemieialdsvligdqag
    y
    

    Sequence, based on observed residues (ATOM records): (download)
    >3of3G (G:)
    atphinaqmgdfadvvlmpgdplrakyiaenfldnavqvcdvrnmfgytgtykgrkisvm
    ghgmgipscsiyvtelikdygvkkiirvgscgavnegikvrdvvigmgactdskvnrirf
    kdhdfaaiadykmvkaaeeaakargidvkvgnlfsaelfytpdpsmfdvmdkygivgvem
    eaagiygvaaeygakalaictvsdhiktgeqttseerqntfnemieialdsvligdqagy
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >3of3H (H:)
    matphinaqmgdfadvvlmpgdplrakyiaenfldnavqvcdvrnmfgytgtykgrkisv
    mghgmgipscsiyvtelikdygvkkiirvgscgavnegikvrdvvigmgactdskvnrir
    fkdhdfaaiadykmvkaaeeaakargidvkvgnlfsaelfytpdpsmfdvmdkygivgve
    meaagiygvaaeygakalaictvsdhiktgeqttseerqntfnemieialdsvligdqag
    y
    

    Sequence, based on observed residues (ATOM records): (download)
    >3of3H (H:)
    atphinaqmgdfadvvlmpgdplrakyiaenfldnavqvcdvrnmfgytgtykgrkisvm
    ghgmgipscsiyvtelikdygvkkiirvgscgavnegikvrdvvigmgactdskvnrirf
    kdhdfaaiadykmvkaaeeaakargidvkvgnlfsaelfytpdpsmfdvmdkygivgvem
    eaagiygvaaeygakalaictvsdhiktgeqttseerqntfnemieialdsvligdqagy
    

  • Chain 'I':
    Sequence, based on SEQRES records: (download)
    >3of3I (I:)
    matphinaqmgdfadvvlmpgdplrakyiaenfldnavqvcdvrnmfgytgtykgrkisv
    mghgmgipscsiyvtelikdygvkkiirvgscgavnegikvrdvvigmgactdskvnrir
    fkdhdfaaiadykmvkaaeeaakargidvkvgnlfsaelfytpdpsmfdvmdkygivgve
    meaagiygvaaeygakalaictvsdhiktgeqttseerqntfnemieialdsvligdqag
    y
    

    Sequence, based on observed residues (ATOM records): (download)
    >3of3I (I:)
    atphinaqmgdfadvvlmpgdplrakyiaenfldnavqvcdvrnmfgytgtykgrkisvm
    ghgmgipscsiyvtelikdygvkkiirvgscgavnegikvrdvvigmgactdskvnrirf
    kdhdfaaiadykmvkaaeeaakargidvkvgnlfsaelfytpdpsmfdvmdkygivgvem
    eaagiygvaaeygakalaictvsdhiktgeqttseerqntfnemieialdsvligdqagy
    

  • Chain 'J':
    Sequence, based on SEQRES records: (download)
    >3of3J (J:)
    matphinaqmgdfadvvlmpgdplrakyiaenfldnavqvcdvrnmfgytgtykgrkisv
    mghgmgipscsiyvtelikdygvkkiirvgscgavnegikvrdvvigmgactdskvnrir
    fkdhdfaaiadykmvkaaeeaakargidvkvgnlfsaelfytpdpsmfdvmdkygivgve
    meaagiygvaaeygakalaictvsdhiktgeqttseerqntfnemieialdsvligdqag
    y
    

    Sequence, based on observed residues (ATOM records): (download)
    >3of3J (J:)
    atphinaqmgdfadvvlmpgdplrakyiaenfldnavqvcdvrnmfgytgtykgrkisvm
    ghgmgipscsiyvtelikdygvkkiirvgscgavnegikvrdvvigmgactdskvnrirf
    kdhdfaaiadykmvkaaeeaakargidvkvgnlfsaelfytpdpsmfdvmdkygivgvem
    eaagiygvaaeygakalaictvsdhiktgeqttseerqntfnemieialdsvligdqagy
    

  • Chain 'K':
    Sequence, based on SEQRES records: (download)
    >3of3K (K:)
    matphinaqmgdfadvvlmpgdplrakyiaenfldnavqvcdvrnmfgytgtykgrkisv
    mghgmgipscsiyvtelikdygvkkiirvgscgavnegikvrdvvigmgactdskvnrir
    fkdhdfaaiadykmvkaaeeaakargidvkvgnlfsaelfytpdpsmfdvmdkygivgve
    meaagiygvaaeygakalaictvsdhiktgeqttseerqntfnemieialdsvligdqag
    y
    

    Sequence, based on observed residues (ATOM records): (download)
    >3of3K (K:)
    atphinaqmgdfadvvlmpgdplrakyiaenfldnavqvcdvrnmfgytgtykgrkisvm
    ghgmgipscsiyvtelikdygvkkiirvgscgavnegikvrdvvigmgactdskvnrirf
    kdhdfaaiadykmvkaaeeaakargidvkvgnlfsaelfytpdpsmfdvmdkygivgvem
    eaagiygvaaeygakalaictvsdhiktgeqttseerqntfnemieialdsvligdqagy
    

  • Chain 'L':
    Sequence, based on SEQRES records: (download)
    >3of3L (L:)
    matphinaqmgdfadvvlmpgdplrakyiaenfldnavqvcdvrnmfgytgtykgrkisv
    mghgmgipscsiyvtelikdygvkkiirvgscgavnegikvrdvvigmgactdskvnrir
    fkdhdfaaiadykmvkaaeeaakargidvkvgnlfsaelfytpdpsmfdvmdkygivgve
    meaagiygvaaeygakalaictvsdhiktgeqttseerqntfnemieialdsvligdqag
    y
    

    Sequence, based on observed residues (ATOM records): (download)
    >3of3L (L:)
    atphinaqmgdfadvvlmpgdplrakyiaenfldnavqvcdvrnmfgytgtykgrkisvm
    ghgmgipscsiyvtelikdygvkkiirvgscgavnegikvrdvvigmgactdskvnrirf
    kdhdfaaiadykmvkaaeeaakargidvkvgnlfsaelfytpdpsmfdvmdkygivgvem
    eaagiygvaaeygakalaictvsdhiktgeqttseerqntfnemieialdsvligdqagy