SCOPe 2.08: Structural Classification of Proteins

PDB entry 3ocf

View 3ocf on RCSB PDB site
Description: Crystal structure of fumarate lyase:delta crystallin from Brucella melitensis in native form
Class: lyase
Keywords: fumarate lyase, fumarase, brucellosis, orchitis, epididymitis, mastitis, dehydration of fumarate to malate, Kreb's cycle, citric acid cycle, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID, LYASE
Deposited on 2010-08-09, released 2010-08-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2010-08-25, with a file datestamp of 2010-08-20.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.174
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Fumarate lyase:Delta crystallin
Species: Brucella melitensis [TaxId:359391]
Gene: aspA, BAB1_1959
Database cross-references and differences (RAF-indexed):
- Uniprot Q2YLW1 (22-End)
Domains in SCOPe 2.08: d3ocfa_
Chain 'B':
Compound: Fumarate lyase:Delta crystallin
Species: Brucella melitensis [TaxId:359391]
Gene: aspA, BAB1_1959
Database cross-references and differences (RAF-indexed):
- Uniprot Q2YLW1 (22-End)
  - expression tag (21)
Domains in SCOPe 2.08: d3ocfb1, d3ocfb2
Chain 'C':
Compound: Fumarate lyase:Delta crystallin
Species: Brucella melitensis [TaxId:359391]
Gene: aspA, BAB1_1959
Database cross-references and differences (RAF-indexed):
- Uniprot Q2YLW1 (22-End)
Domains in SCOPe 2.08: d3ocfc_
Chain 'D':
Compound: Fumarate lyase:Delta crystallin
Species: Brucella melitensis [TaxId:359391]
Gene: aspA, BAB1_1959
Database cross-references and differences (RAF-indexed):
- Uniprot Q2YLW1 (22-End)
  - expression tag (20-21)
Domains in SCOPe 2.08: d3ocfd1, d3ocfd2
Heterogens: CL, EDO, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>3ocfA (A:)
mahhhhhhmgtleaqtqgpgsmtrreqdslgerdipmdayfgiqtlravenfslsdvaln
hipalvralamvkkaaatanyklrqlpepkyaaivaacddiidgllmeqfvvdvfqggag
tssnmnanevianralehlgrprgdyqtihpnddvnmsqstndvyptavrlalllsqnqv
qtalhrliaafeakgrefatvikigrtqlqdavpitlgqefeafaatlredtarleevaa
lfrevnlggtaigtrinashayaeqaivelsqisgielkatgnlveaswdtgafvtfsgi
lrriavklskiandlrllssgprsglgeirlpavqpgssimpgkvnpvipesvnqvcyqv
igndltvtmaaesgqlqlnafeplivynilssmrllgramtnlaercvdgieanvercra
gaeesislatalvpvvgyaraaeiakqalasgqtvmevaiskgldasaltimldplrm

Sequence, based on observed residues (ATOM records): (download)

>3ocfA (A:)
trreqdslgerdipmdayfgiqtlravenfslsdvalnhipalvralamvkkaaatanyk
lrqlpepkyaaivaacddiidgllmeqfvvdvfqggagtssnmnanevianralehlgrp
rgdyqtihpnddvnmsqstndvyptavrlalllsqnqvqtalhrliaafeakgrefatvi
kigrtqlqdavpitlgqefeafaatlredtarleevaalfrevnlggayaeqaivelsqi
sgielkatgnlveaswdtgafvtfsgilrriavklskiandlrllssgprsglgeirlpa
vqpgssimpgkvnpvipesvnqvcyqvigndltvtmaaesgqlqlnafeplivynilssm
rllgramtnlaercvdgieanvercragaeesislatalvpvvgyaraaeiakqalasgq
tvmevaiskgldasaltimldplr

Chain 'B':
Sequence, based on SEQRES records: (download)

>3ocfB (B:)
mahhhhhhmgtleaqtqgpgsmtrreqdslgerdipmdayfgiqtlravenfslsdvaln
hipalvralamvkkaaatanyklrqlpepkyaaivaacddiidgllmeqfvvdvfqggag
tssnmnanevianralehlgrprgdyqtihpnddvnmsqstndvyptavrlalllsqnqv
qtalhrliaafeakgrefatvikigrtqlqdavpitlgqefeafaatlredtarleevaa
lfrevnlggtaigtrinashayaeqaivelsqisgielkatgnlveaswdtgafvtfsgi
lrriavklskiandlrllssgprsglgeirlpavqpgssimpgkvnpvipesvnqvcyqv
igndltvtmaaesgqlqlnafeplivynilssmrllgramtnlaercvdgieanvercra
gaeesislatalvpvvgyaraaeiakqalasgqtvmevaiskgldasaltimldplrm

Sequence, based on observed residues (ATOM records): (download)

>3ocfB (B:)
mtrreqdslgerdipmdayfgiqtlravenfslsdvalnhipalvralamvkkaaatany
klrqlpepkyaaivaacddiidgllmeqfvvdvfqggagtssnmnanevianralehlgr
prgdyqtihpnddvnmsqstndvyptavrlalllsqnqvqtalhrliaafeakgrefatv
ikigrtqlqdavpitlgqefeafaatlredtarleevaalfrevnlgghayaeqaivels
qisgielkatgnlveaswdtgafvtfsgilrriavklskiandlrllssgprsglgeirl
pavqpgssimpgkvnpvipesvnqvcyqvigndltvtmaaesgqlqlnafeplivynils
smrllgramtnlaercvdgieanvercragaeesislatalvpvvgyaraaeiakqalas
gqtvmevais

Chain 'C':
Sequence, based on SEQRES records: (download)

>3ocfC (C:)
mahhhhhhmgtleaqtqgpgsmtrreqdslgerdipmdayfgiqtlravenfslsdvaln
hipalvralamvkkaaatanyklrqlpepkyaaivaacddiidgllmeqfvvdvfqggag
tssnmnanevianralehlgrprgdyqtihpnddvnmsqstndvyptavrlalllsqnqv
qtalhrliaafeakgrefatvikigrtqlqdavpitlgqefeafaatlredtarleevaa
lfrevnlggtaigtrinashayaeqaivelsqisgielkatgnlveaswdtgafvtfsgi
lrriavklskiandlrllssgprsglgeirlpavqpgssimpgkvnpvipesvnqvcyqv
igndltvtmaaesgqlqlnafeplivynilssmrllgramtnlaercvdgieanvercra
gaeesislatalvpvvgyaraaeiakqalasgqtvmevaiskgldasaltimldplrm

Sequence, based on observed residues (ATOM records): (download)

>3ocfC (C:)
trreqdslgerdipmdayfgiqtlravenfslsdvalnhipalvralamvkkaaatanyk
lrqlpepkyaaivaacddiidgllmeqfvvdvfqggagtssnmnanevianralehlgrp
rgdyqtihpnddvnmsqstndvyptavrlalllsqnqvqtalhrliaafeakgrefatvi
kigrtqlqdavpitlgqefeafaatlredtarleevaalfrevnlggtayaeqaivelsq
isgielkatgnlveaswdtgafvtfsgilrriavklskiandlrllssgprsglgeirlp
avqpgssimpgkvnpvipesvnqvcyqvigndltvtmaaesgqlqlnafeplivynilss
mrllgramtnlaercvdgieanvercragaeesislatalvpvvgyaraaeiakqalasg
qtvmevaiskgldasaltimldpl

Chain 'D':
Sequence, based on SEQRES records: (download)

>3ocfD (D:)
mahhhhhhmgtleaqtqgpgsmtrreqdslgerdipmdayfgiqtlravenfslsdvaln
hipalvralamvkkaaatanyklrqlpepkyaaivaacddiidgllmeqfvvdvfqggag
tssnmnanevianralehlgrprgdyqtihpnddvnmsqstndvyptavrlalllsqnqv
qtalhrliaafeakgrefatvikigrtqlqdavpitlgqefeafaatlredtarleevaa
lfrevnlggtaigtrinashayaeqaivelsqisgielkatgnlveaswdtgafvtfsgi
lrriavklskiandlrllssgprsglgeirlpavqpgssimpgkvnpvipesvnqvcyqv
igndltvtmaaesgqlqlnafeplivynilssmrllgramtnlaercvdgieanvercra
gaeesislatalvpvvgyaraaeiakqalasgqtvmevaiskgldasaltimldplrm

Sequence, based on observed residues (ATOM records): (download)

>3ocfD (D:)
smtrreqdslgerdipmdayfgiqtlravenfslsdvalnhipalvralamvkkaaatan
yklrqlpepkyaaivaacddiidgllmeqfvvdvfqggagtssnmnanevianralehlg
rprgdyqtihpnddvnmsqstndvyptavrlalllsqnqvqtalhrliaafeakgrefat
vikigrtqlqdavpitlgqefeafaatlredtarleevaalfrevnlggtahayaeqaiv
elsqisgielkatgnlveaswdtgafvtfsgilrriavklskiandlrllssgprsglge
irlpavqpgssimpgkvnpvipesvnqvcyqvigndltvtmaaesgqlqlnafeplivyn
ilssmrllgramtnlaercvdgieanvercragaeesislatalvpvaraaeiakqalas
gqtvmevais