PDB entry 3occ

View 3occ on RCSB PDB site
Description: Crystal structure of PNP with DADMEimmH from Yersinia pseudotuberculosis
Class: transferase
Keywords: Structural Genomics, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC, transferase
Deposited on 2010-08-09, released 2010-11-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-02-10, with a file datestamp of 2021-02-05.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.49 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Yersinia pseudotuberculosis [TaxId:502800]
    Gene: deoD, YPK_3624
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3occa_
  • Chain 'B':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Yersinia pseudotuberculosis [TaxId:502800]
    Gene: deoD, YPK_3624
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3occb_
  • Chain 'C':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Yersinia pseudotuberculosis [TaxId:502800]
    Gene: deoD, YPK_3624
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3occc_
  • Chain 'D':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Yersinia pseudotuberculosis [TaxId:502800]
    Gene: deoD, YPK_3624
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3occd_
  • Chain 'E':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Yersinia pseudotuberculosis [TaxId:502800]
    Gene: deoD, YPK_3624
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3occe_
  • Chain 'F':
    Compound: Purine nucleoside phosphorylase deoD-type
    Species: Yersinia pseudotuberculosis [TaxId:502800]
    Gene: deoD, YPK_3624
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3occf_
  • Heterogens: DIH, PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3occA (A:)
    matphinaemgdfadvvlmpgdplrakfiaetflqdvrevnnvrgmlgftgtykgrkisv
    mghgmgipscsiyakelitdfgvkkiirvgscgavrtdvklrdvvigmgactdskvnrmr
    fkdhdyaaiadfemtrnavdaakakgvnvrvgnlfsadlfytpdpqmfdvmekygilgve
    meaagiygvaaefgakaltictvsdhirtgeqttaaerqttfndmieialesvllgdna
    

    Sequence, based on observed residues (ATOM records): (download)
    >3occA (A:)
    tphinaemgdfadvvlmpgdplrakfiaetflqdvrevnnvrgmlgftgtykgrkisvmg
    hgmgipscsiyakelitdfgvkkiirvgscgavrtdvklrdvvigmgactdskvnrmrfk
    dhdyaaiadfemtrnavdaakakgvnvrvgnlfsadlfytpdpqmfdvmekygilgveme
    aagiygvaaefgakaltictvsdhirtgeqttaaerqttfndmieialesvllgdna
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3occB (B:)
    matphinaemgdfadvvlmpgdplrakfiaetflqdvrevnnvrgmlgftgtykgrkisv
    mghgmgipscsiyakelitdfgvkkiirvgscgavrtdvklrdvvigmgactdskvnrmr
    fkdhdyaaiadfemtrnavdaakakgvnvrvgnlfsadlfytpdpqmfdvmekygilgve
    meaagiygvaaefgakaltictvsdhirtgeqttaaerqttfndmieialesvllgdna
    

    Sequence, based on observed residues (ATOM records): (download)
    >3occB (B:)
    tphinaemgdfadvvlmpgdplrakfiaetflqdvrevnnvrgmlgftgtykgrkisvmg
    hgmgipscsiyakelitdfgvkkiirvgscgavrtdvklrdvvigmgactdskvnrmrfk
    dhdyaaiadfemtrnavdaakakgvnvrvgnlfsadlfytpdpqmfdvmekygilgveme
    aagiygvaaefgakaltictvsdhirtgeqttaaerqttfndmieialesvllgdna
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3occC (C:)
    matphinaemgdfadvvlmpgdplrakfiaetflqdvrevnnvrgmlgftgtykgrkisv
    mghgmgipscsiyakelitdfgvkkiirvgscgavrtdvklrdvvigmgactdskvnrmr
    fkdhdyaaiadfemtrnavdaakakgvnvrvgnlfsadlfytpdpqmfdvmekygilgve
    meaagiygvaaefgakaltictvsdhirtgeqttaaerqttfndmieialesvllgdna
    

    Sequence, based on observed residues (ATOM records): (download)
    >3occC (C:)
    phinaemgdfadvvlmpgdplrakfiaetflqdvrevnnvrgmlgftgtykgrkisvmgh
    gmgipscsiyakelitdfgvkkiirvgscgavrtdvklrdvvigmgactdskvnrmrfkd
    hdyaaiadfemtrnavdaakakgvnvrvgnlfsadlfytpdpqmfdvmekygilgvemea
    agiygvaaefgakaltictvsdhirtgeqttaaerqttfndmieialesvllgdna
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3occD (D:)
    matphinaemgdfadvvlmpgdplrakfiaetflqdvrevnnvrgmlgftgtykgrkisv
    mghgmgipscsiyakelitdfgvkkiirvgscgavrtdvklrdvvigmgactdskvnrmr
    fkdhdyaaiadfemtrnavdaakakgvnvrvgnlfsadlfytpdpqmfdvmekygilgve
    meaagiygvaaefgakaltictvsdhirtgeqttaaerqttfndmieialesvllgdna
    

    Sequence, based on observed residues (ATOM records): (download)
    >3occD (D:)
    atphinaemgdfadvvlmpgdplrakfiaetflqdvrevnnvrgmlgftgtykgrkisvm
    ghgmgipscsiyakelitdfgvkkiirvgscgavrtdvklrdvvigmgactdskvnrmrf
    kdhdyaaiadfemtrnavdaakakgvnvrvgnlfsadlfytpdpqmfdvmekygilgvem
    eaagiygvaaefgakaltictvsdhirtgeqttaaerqttfndmieialesvllgdna
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >3occE (E:)
    matphinaemgdfadvvlmpgdplrakfiaetflqdvrevnnvrgmlgftgtykgrkisv
    mghgmgipscsiyakelitdfgvkkiirvgscgavrtdvklrdvvigmgactdskvnrmr
    fkdhdyaaiadfemtrnavdaakakgvnvrvgnlfsadlfytpdpqmfdvmekygilgve
    meaagiygvaaefgakaltictvsdhirtgeqttaaerqttfndmieialesvllgdna
    

    Sequence, based on observed residues (ATOM records): (download)
    >3occE (E:)
    atphinaemgdfadvvlmpgdplrakfiaetflqdvrevnnvrgmlgftgtykgrkisvm
    ghgmgipscsiyakelitdfgvkkiirvgscgavrtdvklrdvvigmgactdskvnrmrf
    kdhdyaaiadfemtrnavdaakakgvnvrvgnlfsadlfytpdpqmfdvmekygilgvem
    eaagiygvaaefgakaltictvsdhirtgeqttaaerqttfndmieialesvllgdna
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >3occF (F:)
    matphinaemgdfadvvlmpgdplrakfiaetflqdvrevnnvrgmlgftgtykgrkisv
    mghgmgipscsiyakelitdfgvkkiirvgscgavrtdvklrdvvigmgactdskvnrmr
    fkdhdyaaiadfemtrnavdaakakgvnvrvgnlfsadlfytpdpqmfdvmekygilgve
    meaagiygvaaefgakaltictvsdhirtgeqttaaerqttfndmieialesvllgdna
    

    Sequence, based on observed residues (ATOM records): (download)
    >3occF (F:)
    atphinaemgdfadvvlmpgdplrakfiaetflqdvrevnnvrgmlgftgtykgrkisvm
    ghgmgipscsiyakelitdfgvkkiirvgscgavrtdvklrdvvigmgactdskvnrmrf
    kdhdyaaiadfemtrnavdaakakgvnvrvgnlfsadlfytpdpqmfdvmekygilgvem
    eaagiygvaaefgakaltictvsdhirtgeqttaaerqttfndmieialesvllgdna