PDB entry 3o9w
View 3o9w on RCSB PDB site
Description: Recognition of a Glycolipid Antigen by the iNKT Cell TCR
Class: immune system
Keywords: antigen presentation, glycolipid, NKT cells, IMMUNE SYSTEM
Deposited on
2010-08-04, released
2010-09-29
The last revision prior to the SCOPe 2.02 freeze date was dated
2010-10-13, with a file datestamp of
2010-10-08.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.198
AEROSPACI score: 0.28
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Antigen-presenting glycoprotein CD1d1
Species: Mus musculus [TaxId:10090]
Gene: Cd1.1, CD1d, Cd1d1
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: beta-2 microglobulin
Species: Mus musculus [TaxId:10090]
Gene: B2m, beta-2-microglobulin, mCG_11606, RP23-34E24.5-001
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.02: d3o9wb_ - Chain 'C':
Compound: Valpha14 chimera (Mouse variable domain, Human T-cell receptor alpha chain C region constant domain)
Species: Mus musculus, Homo sapiens [TaxId:10090,9606]
Gene: TRAC, TCRA
Database cross-references and differences (RAF-indexed):
- PDB 3O9W (Start-120)
- Uniprot P01848 (121-End)
- engineered mutation (162)
- Chain 'D':
Compound: Vbeta8.2 chimera (Mouse variable domain, Human T-cell receptor beta-2 chain C region constant domain)
Species: Mus musculus, Homo sapiens [TaxId:10090,9606]
Gene: TRBC2, TCRBC2
Database cross-references and differences (RAF-indexed):
- PDB 3O9W (Start-129)
- Uniprot A0A5B9 (130-240)
- engineered mutation (168)
- engineered mutation (186)
- Heterogens: NAG, 1O2, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3o9wB (B:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhasmaepktvywdrdm
Sequence, based on observed residues (ATOM records): (download)
>3o9wB (B:)
qktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdws
fyilahteftptetdtyacrvkhasmaepktvywdrd
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.