PDB entry 3o4l
View 3o4l on RCSB PDB site
Description: Genetic and structural basis for selection of a ubiquitous T cell receptor deployed in Epstein-Barr virus
Class: immune system
Keywords: MHC I, Immunoglobulin, Antigen Presentation, Immune Recognition, IMMUNE SYSTEM
Deposited on
2010-07-27, released
2011-01-12
The last revision prior to the SCOPe 2.08 freeze date was dated
2014-02-12, with a file datestamp of
2014-02-07.
Experiment type: XRAY
Resolution: 2.54 Å
R-factor: 0.225
AEROSPACI score: 0.22
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: MHC class I antigen
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3o4la1, d3o4la2 - Chain 'B':
Compound: Beta-2-microglobulin
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Uniprot P61769 (1-99)
- expression tag (0)
- engineered (91)
Domains in SCOPe 2.08: d3o4lb1, d3o4lb2 - Chain 'C':
Compound: BSLF2/BMLF1 protein
Species: Human herpesvirus 4 [TaxId:10376]
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: T-cell receptor, alpha chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3o4ld1, d3o4ld2 - Chain 'E':
Compound: T-cell receptor, beta chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3o4le1, d3o4le2 - Heterogens: GOL, SO4, MES, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>3o4lA (A:)
gshsmryfftsvsrpgrgeprfiavgyvddtqfvrfdsdaasqrmeprapwieqegpeyw
dgetrkvkahsqthrvdlgtlrgyynqseagshtvqrmygcdvgsdwrflrgyhqyaydg
kdyialkedlrswtaadmaaqttkhkweaahvaeqlraylegtcvewlrrylengketlq
rtdapkthmthhavsdheatlrcwalsfypaeitltwqrdgedqtqdtelvetrpagdgt
fqkwaavvvpsgqeqrytchvqheglpkpltlrwep
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>3o4lB (B:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpcivkwdrdm
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>3o4lD (D:)
qslflsvregdssvinctytdssstylywykqepgaglqlltyifsnmdmkqdqrktvll
nkkdkhlslriadtqtgdsaiyfcaednnarlmfgdgtqlvvkpniqnpdpavyqlrdsk
ssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsnksdfacana
fnnsiipedtffpsp
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>3o4lE (E:)
gavvsqhpswvicksgtsvkiecrsldfqattmfwyrqfpkqslmlmatsnegskatyeq
gvekdkflinhasltlstltvtsahpedssfyicsardgtgngytfgsgtrltvvedlnk
vfppevavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplke
qpalndsryalssrlrvsatfwqdprnhfrcqvqfyglsendewtqdrakpvtqivsaea
wgrad