PDB entry 3o4l

View 3o4l on RCSB PDB site
Description: Genetic and structural basis for selection of a ubiquitous T cell receptor deployed in Epstein-Barr virus
Class: immune system
Keywords: MHC I, Immunoglobulin, Antigen Presentation, Immune Recognition, IMMUNE SYSTEM
Deposited on 2010-07-27, released 2011-01-12
The last revision prior to the SCOPe 2.07 freeze date was dated 2014-02-12, with a file datestamp of 2014-02-07.
Experiment type: XRAY
Resolution: 2.54 Å
R-factor: 0.225
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: MHC class I antigen
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3o4la1, d3o4la2
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (1-99)
      • expression tag (0)
      • engineered (91)
    Domains in SCOPe 2.07: d3o4lb1, d3o4lb2
  • Chain 'C':
    Compound: BSLF2/BMLF1 protein
    Species: Human herpesvirus 4 [TaxId:10376]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: T-cell receptor, alpha chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 3O4L (0-194)
    Domains in SCOPe 2.07: d3o4ld1, d3o4ld2
  • Chain 'E':
    Compound: T-cell receptor, beta chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 3O4L (0-244)
    Domains in SCOPe 2.07: d3o4le1, d3o4le2
  • Heterogens: GOL, SO4, MES, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3o4lA (A:)
    gshsmryfftsvsrpgrgeprfiavgyvddtqfvrfdsdaasqrmeprapwieqegpeyw
    dgetrkvkahsqthrvdlgtlrgyynqseagshtvqrmygcdvgsdwrflrgyhqyaydg
    kdyialkedlrswtaadmaaqttkhkweaahvaeqlraylegtcvewlrrylengketlq
    rtdapkthmthhavsdheatlrcwalsfypaeitltwqrdgedqtqdtelvetrpagdgt
    fqkwaavvvpsgqeqrytchvqheglpkpltlrwep
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3o4lB (B:)
    miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
    wsfyllyyteftptekdeyacrvnhvtlsqpcivkwdrdm
    

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3o4lD (D:)
    qslflsvregdssvinctytdssstylywykqepgaglqlltyifsnmdmkqdqrktvll
    nkkdkhlslriadtqtgdsaiyfcaednnarlmfgdgtqlvvkpniqnpdpavyqlrdsk
    ssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsnksdfacana
    fnnsiipedtffpsp
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3o4lE (E:)
    gavvsqhpswvicksgtsvkiecrsldfqattmfwyrqfpkqslmlmatsnegskatyeq
    gvekdkflinhasltlstltvtsahpedssfyicsardgtgngytfgsgtrltvvedlnk
    vfppevavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplke
    qpalndsryalssrlrvsatfwqdprnhfrcqvqfyglsendewtqdrakpvtqivsaea
    wgrad