PDB entry 3o2z

View 3o2z on RCSB PDB site
Description: Yeast 80S ribosome. This entry consists of the 40S subunit of the first 80S in the asymmetric unit.
Deposited on 2010-07-23, released 2010-12-15
The last revision was dated 2014-12-10, with a file datestamp of 2014-12-05.
Experiment type: XRAY
Resolution: 4 Å
R-factor: 0.28
AEROSPACI score: -0.03 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: 18S Ribosomal RNA
    Species: Saccharomyces cerevisiae [TaxId:4932]
  • Chain 'A':
    Compound: 40S ribosomal protein S0-A
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: 40S ribosomal protein S2
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: 40S ribosomal protein S3
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: 40S ribosomal protein S5
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: 40S ribosomal protein S9-A
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: 40S ribosomal protein S11
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: 40S ribosomal protein S13
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: 40S ribosomal protein S14-A
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: 40S ribosomal protein S15
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: 40S ribosomal protein S16
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: 40S ribosomal protein S17-A
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: 40S ribosomal protein S18
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: 40S ribosomal protein S19-A
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: 40S ribosomal protein S20
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: 40S ribosomal protein S22-A
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: 40S ribosomal protein S23
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Q':
    Compound: 40S ribosomal protein S25-A
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: 40S ribosomal protein S28-A
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'S':
    Compound: 40S ribosomal protein S29-A
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'T':
    Compound: Guanine nucleotide-binding protein subunit beta-like protein; RACK-1
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'a':
    Compound: Unassigned secondary structure
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
    • PDB 3O2Z (0-19)
  • Chain 'b':
    Compound: Unassigned secondary structure
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
    • PDB 3O2Z (0-104)
  • Chain 'c':
    Compound: Unassigned secondary structure
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
    • PDB 3O2Z (0-91)
  • Chain 'd':
    Compound: Unassigned secondary structure
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
    • PDB 3O2Z (0-34)
  • Chain 'e':
    Compound: Unassigned secondary structure
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
    • PDB 3O2Z (0-20)
  • Chain 'f':
    Compound: Unassigned secondary structure
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
    • PDB 3O2Z (0-10)
  • Chain 'h':
    Compound: Unassigned secondary structure
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
    • PDB 3O2Z (0-39)
  • Heterogens: OHX

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.07, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain '1':
    No sequence available.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3o2zA (A:)
    mslpatfdltpedaqlllaanthlgarnvqvhqepyvfnarpdgvhvinvgktweklvla
    ariiaaipnpedvvaissrtfgqravlkfaahtgatpiagrftpgsftnyitrsfkeprl
    vivtdprsdaqaikeasyvnipvialtdldspsefvdvaipcnnrgkhsigliwyllare
    vlrlrgalvdrtqpwsimpdlyfyrdpeeveqqvaeeatteeageeeakeevteeqaeat
    ewaeenadnvew
    

    Sequence, based on observed residues (ATOM records):
    >3o2zA (A:)
    slpatfdltpedaqlllaanthlgarnvqvhqepyvfnarpdgvhvinvgktweklvlaa
    riiaaipnpedvvaissrtfgqravlkfaahtgatpiagrftpgsftnyitrsfkeprlv
    ivtdprsdaqaikeasyvnipvialtdldspsefvdvaipcnnrgkhsigliwyllarev
    lrlrgalvdrtqpwsimpdlyfyrdpeeveqqvaeeatte
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3o2zB (B:)
    msapeaqqqkrggfggrnrgrpnrrgprnteekgwvpvtklgrlvkagkittieeiflhs
    lpvkefqiidtllpglqdevmnikpvqkqtragqrtrfkavvvvgdsnghvglgiktake
    vagairagiiiaklsvipirrgywgtnlgqphslatkttgkcgsvtvrlipaprgsgiva
    spavkkllqlagvedvytqsngktrtlentlkaafvaigntygfltpnlwaeqplpvspl
    diysdeasaqkkrf
    

    Sequence, based on observed residues (ATOM records):
    >3o2zB (B:)
    wvpvtklgrlvkagkittieeiflhslpvkefqiidtllpglqdevmnikpvqkqtragq
    rtrfkavvvvgdsnghvglgiktakevagairagiiiaklsvipirrgywgtnlgqphsl
    atkttgkcgsvtvrlipaprgsgivaspavkkllqlagvedvytqsngktrtlentlkaa
    fvaigntygfltpnlwaeqplpvspldiysdeasaqkkr
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3o2zC (C:)
    mvaliskkrklvadgvfyaelnefftrelaeegysgvevrvtptkteviiratrtqdvlg
    engrrineltllvqkrfkyapgtivlyaervqdrglsavaqaesmkfkllnglairraay
    gvvryvmesgakgcevvvsgklraarakamkfadgflihsgqpvndfidtatrhvlmrqg
    vlgikvkimrdpaksrtgpkalpdavtiiepkeeepilapsvkdyrpaeeteaqaepvea
    

    Sequence, based on observed residues (ATOM records):
    >3o2zC (C:)
    kkrklvadgvfyaelnefftrelaeegysgvevrvtptkteviiratrtqdvlgengrri
    neltllvqkrfkyapgtivlyaervqdrglsavaqaesmkfkllnglairraaygvvryv
    mesgakgcevvvsgklraarakamkfadgflihsgqpvndfidtatrhvlmrqgvlgikv
    kimrdpaks
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3o2zD (D:)
    msdteapvevqedfevveeftpvvlatpipeevqqaqteiklfnkwsfeevevkdaslvd
    yvqvrqpifvahtagryankrfrkaqcpiierltnslmmngrnngkklkavriikhtldi
    invltdqnpiqvvvdaitntgpredttrvggggaarrqavdvsplrrvnqaialltigar
    eaafrniktiaetlaeelinaakgsstsyaikkkdelervaksnr
    

    Sequence, based on observed residues (ATOM records):
    >3o2zD (D:)
    eiklfnkwsfeevevkdaslvdyvqvrqpqcpiierltnslmmngrnngkklkavriikh
    tldiinvltdqnpiqvvvdaitntgpredttrvggggaarrqavdvsplrrvnqaiallt
    igareaafrniktiaetlaeelinaakgsstsyaikkkdelervaksnr
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >3o2zE (E:)
    mpraprtysktystpkrpyessrldaelklagefglknkkeiyrisfqlskirraardll
    trdekdpkrlfegnalirrlvrvgvlsedkkkldyvlalkvedflerrlqtqvyklglak
    svhharvlitqrhiavgkqivnipsfmvrldsekhidfaptspfggarpgrvarrnaark
    aeasgeaadeadeadee
    

    Sequence, based on observed residues (ATOM records):
    >3o2zE (E:)
    ssrldaelklagefglknkkeiyrisfqlskirraardlltrdekdpkrlfegnalirrl
    vrvgvlsedkkkldyvlalkvedflerrlqtqvyklglaksvhharvlitqrhiavgkqi
    vnipsfmvrldsekhidfarpgrvarrnaarkaeasg
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >3o2zF (F:)
    msteltvqserafqkqphifnnpkvktskrtkrwyknaglgfktpktaiegsyidkkcpf
    tglvsirgkiltgtvvstkmhrtivirraylhyipkynryekrhknvpvhvspafrvqvg
    divtvgqcrpisktvrfnvvkvsaaagkankqfakf
    

    Sequence, based on observed residues (ATOM records):
    >3o2zF (F:)
    kiltgtvvstkmhrtivirraylhyipkynryekrhknvpvhvspafrvqvgdivtvgqc
    rpisktvrfnvvkvsaa
    

  • Chain 'G':
    Sequence, based on SEQRES records:
    >3o2zG (G:)
    mgrmhsagkgisssaipysrnapawfklssesvieqivkyarkgltpsqigvllrdahgv
    tqarvitgnkimrilksnglapeipedlyylikkavsvrkhlernrkdkdakfrlilies
    rihrlaryyrtvavlppnwkyesatasalvn
    

    Sequence, based on observed residues (ATOM records):
    >3o2zG (G:)
    eqivkyarkgltpsqigvllrdahgvtqarvitgnkimrilksnglapeipedlyylikk
    avsvrkhlernrkdkdakfrliliesrihrlaryyrtvavlppnwkyesatasalvn
    

  • Chain 'H':
    Sequence, based on SEQRES records:
    >3o2zH (H:)
    msnvvqardnsqvfgvariyasfndtfvhvtdlsgketiarvtggmkvkadrdesspyaa
    mlaaqdvaakckevgitavhvkiratggtrtktpgpggqaalralarsglrigriedvtp
    vpsdstrkkggrrgrrl
    

    Sequence, based on observed residues (ATOM records):
    >3o2zH (H:)
    snvvqardnsqvfgvariyasfndtfvhvtdlsgketiarvtggmkvkadrdesspyaam
    laaqdvaakckevgitavhvkiratggtrtktpgpggqaalralarsglrigriedvtpv
    psdstrkk
    

  • Chain 'I':
    Sequence, based on SEQRES records:
    >3o2zI (I:)
    msqavnakkrvfkthsyrgvdlekllemstedfvklaparvrrrfargmtskpagfmkkl
    raaklaapenekpapvrthmrnmiivpemigsvvgiyngkafnqveirpemlghylgefs
    itytpvrhgragattsrfiplk
    

    Sequence, based on observed residues (ATOM records):
    >3o2zI (I:)
    krvfkthsyrgvdlekllemstedfvklaparvrrrfargmtskpagfmkklraaklaap
    enekpapvrthmrnmiivpemigsvvgiyngkafnqveirpemlghylgefsitytpvrh
    g
    

  • Chain 'J':
    Sequence, based on SEQRES records:
    >3o2zJ (J:)
    msavpsvqtfgkkksatavahvkagkglikvngspitlvepeilrfkvyeplllvgldkf
    snidirvrvtggghvsqvyairqaiakglvayhqkyvdeqsknelkkaftsydrtlliad
    srrpepkkfggkgarsrfqksyr
    

    Sequence, based on observed residues (ATOM records):
    >3o2zJ (J:)
    fgkkksatavahvkagkglikvngspitlvepeilrfkvyeplllvgldkfsnidirvrv
    tggghvsqvyairqaiakglvayhqkyvdeqsknelkkaftsydrtlliadsrrpepkkf
    ggkgarsrfqksyr
    

  • Chain 'K':
    Sequence, based on SEQRES records:
    >3o2zK (K:)
    mgrvrtktvkraskalieryypkltldfqtnkrlcdeiatiqskrlrnkiagytthlmkr
    iqkgpvrgisfklqeeererkdqyvpevsaldlsrsngvlnvdnqtsdlvkslglklpls
    vinvsaqrdrryrkrv
    

    Sequence, based on observed residues (ATOM records):
    >3o2zK (K:)
    ktvkraskalieryypkltldfqtnkrlcdeiatiqskrlrnkiagytthlmkriqkgpv
    rgisfkl
    

  • Chain 'L':
    Sequence, based on SEQRES records:
    >3o2zL (L:)
    mslvvqeqgsfqhilrllntnvdgnikivyalttikgvgrrysnlvckkadvdlhkrage
    ltqeelerivqimqnpthykipawflnrqnditdgkdyhtlannvesklrddlerlkkir
    ahrgirhfwglrvrgqhtkttgrrra
    

    Sequence, based on observed residues (ATOM records):
    >3o2zL (L:)
    lrllntnvdgnikivyalttikgvgrrysnlvckkadvdlhkrageltqeelerivqimq
    npthykipawfldgkdyhtlannvesklrddlerlkkirahrgirhfwglrvrgqhtktt
    

  • Chain 'M':
    Sequence, based on SEQRES records:
    >3o2zM (M:)
    mpgvsvrdvaaqdfinayasflqrqgklevpgyvdivktssgnemppqdaegwfykraas
    varhiymrkqvgvgklnklyggaksrgvrpykhidasgsinrkvlqalekigiveispkg
    grrisengqrdldriaaqtleede
    

    Sequence, based on observed residues (ATOM records):
    >3o2zM (M:)
    mpgvsvrdvaaqdfinayasflqrqgklevpgyvdivaegwfykraasvarhiymrkqvg
    sinrkvlqalekigiveispkggrrisengqrdldriaaqtleede
    

  • Chain 'N':
    Sequence, based on SEQRES records:
    >3o2zN (N:)
    msdfqkekveeqeqqqqqiikiritltstkvkqlenvssnivknaeqhnlvkkgpvrlpt
    kvlkistrktpngegsktwetyemrihkryidleapvqivkritqitiepgvdvevvvas
    n
    

    Sequence, based on observed residues (ATOM records):
    >3o2zN (N:)
    eeqeqqqqqiikiritltstkvkqlenvssnivknaeqhnlvkkgpvrlptkvlkistrk
    tpngegsktwetyemrihkryidleapvqivkritqitiepgvdvevvvas
    

  • Chain 'O':
    Sequence, based on SEQRES records:
    >3o2zO (O:)
    mtrssvladalnainnaektgkrqvlirpsskviikflqvmqkhgyigefeyiddhrsgk
    ivvqlngrlnkcgvisprfnvkigdiekwtanllparqfgyvilttsagimdheearrkh
    vsgkilgfvy
    

    Sequence, based on observed residues (ATOM records):
    >3o2zO (O:)
    ssvladalnainnaektgkrqvlirpsskviikflqvmqkhgyigefeyiddhrsgkivv
    qlngrlnkcgvisprfnvkigdiekwtanllparqfgyvilttsagimdheearrkhvsg
    kilgfvy
    

  • Chain 'P':
    Sequence, based on SEQRES records:
    >3o2zP (P:)
    mgkgkprglnsarklrvhrrnnrwaennykkrllgtafksspfggsshakgivleklgie
    skqpnsairkcvrvqlikngkkvtafvpndgclnfvdendevllagfgrkgkakgdipgv
    rfkvvkvsgvsllalwkekkekprs
    

    Sequence, based on observed residues (ATOM records):
    >3o2zP (P:)
    nnykkrllgtafksspfggsshakgivleklgieskqpnsairkcvrvqlikngkkvtaf
    vpndgclnfvdendevllagfgrkgkakgdipgvrfkvvkvsgvsllalwkekkek
    

  • Chain 'Q':
    Sequence, based on SEQRES records:
    >3o2zQ (Q:)
    mppkqqlskaakaaaalaggkkskkkwskksmkdraqhavildqekydrilkevptyryv
    svsvlvdrlkiggslarialrhlekegiikpiskhskqaiytratase
    

    Sequence, based on observed residues (ATOM records):
    >3o2zQ (Q:)
    aqhavildqekydrilkevptyryvsvsvlvdrlkiggslarialrhlekegiikpiskh
    skqaiyt
    

  • Chain 'R':
    Sequence, based on SEQRES records:
    >3o2zR (R:)
    mdnktpvtlakvikvlgrtgsrggvtqvrvefledtsrtivrnvkgpvrendilvlmese
    rearrlr
    

    Sequence, based on observed residues (ATOM records):
    >3o2zR (R:)
    vtlakvikvlgrtgsrggvtqvrvefledtsrtivrnvkgpvrendi
    

  • Chain 'S':
    Sequence, based on SEQRES records:
    >3o2zS (S:)
    mahenvwfshprrygkgsrqcrvcsshtglirkyglnicrqcfrekandigfnkfr
    

    Sequence, based on observed residues (ATOM records):
    >3o2zS (S:)
    gkgsrqcrvcsshtglirkyglnicrqcfrekandigfn
    

  • Chain 'T':
    Sequence, based on SEQRES records:
    >3o2zT (T:)
    masnevlvlrgtleghngwvtslatsagqpnlllsasrdktliswkltgddqkfgvpvrs
    fkghshivqdctltadgayalsaswdktlrlwdvatgetyqrfvghksdvmsvdidkkas
    miisgsrdktikvwtikgqclatllghndwvsqvrvvpnekadddsvtiisagndkmvka
    wnlnqfqieadfighnsnintltaspdgtliasagkdgeimlwnlaakkamytlsaqdev
    fslafspnrywlaaatatgikvfsldpqylvddlrpefagyskaaephavslawsadgqt
    lfagytdnvirvwqvmtan
    

    Sequence, based on observed residues (ATOM records):
    >3o2zT (T:)
    masnevlvlrgtleghngwvtslatsagqpnlllsasrdktliswkltgddqkfgvpvrs
    fkghshivqdctltadgayalsaswdktlrlwdvatgetyqrfvghksdvmsvdidkkas
    miisgsrdktikvwtikgqclatllghndwvsqvrvvpnsvtiisagndkmvkawnlnqf
    qieadfighnsnintltaspdgtliasagkdgeimlwnlaakkamytlsaqdevfslafs
    pnrywlaaatatgikvfsldpqylvddlrpefagyskaaephavslawsadgqtlfagyt
    dnvirvwqvmtan
    

  • Chain 'a':
    Sequence; same for both SEQRES and ATOM records:
    >3o2za (a:)
    xxxxxxxxxxxxxxxxxxxx
    

  • Chain 'b':
    Sequence; same for both SEQRES and ATOM records:
    >3o2zb (b:)
    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
    

  • Chain 'c':
    Sequence; same for both SEQRES and ATOM records:
    >3o2zc (c:)
    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
    

  • Chain 'd':
    Sequence; same for both SEQRES and ATOM records:
    >3o2zd (d:)
    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
    

  • Chain 'e':
    Sequence; same for both SEQRES and ATOM records:
    >3o2ze (e:)
    xxxxxxxxxxxxxxxxxxxxx
    

  • Chain 'f':
    Sequence; same for both SEQRES and ATOM records:
    >3o2zf (f:)
    xxxxxxxxxxx
    

  • Chain 'h':
    Sequence; same for both SEQRES and ATOM records:
    >3o2zh (h:)
    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx