PDB entry 3o1v
View 3o1v on RCSB PDB site
Description: Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase
Class: oxidoreductase
Keywords: Demethylase, OXIDOREDUCTASE
Deposited on
2010-07-22, released
2010-11-17
The last revision prior to the SCOPe 2.01 freeze date was dated
2010-11-17, with a file datestamp of
2010-11-12.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.193
AEROSPACI score: 0.46
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Alpha-ketoglutarate-dependent dioxygenase AlkB
Species: Escherichia coli [TaxId:83333]
Gene: alkB, aidD, b2212, JW2200
Database cross-references and differences (RAF-indexed):
- Uniprot P05050
- engineered mutation (118)
Domains in SCOPe 2.01: d3o1va_ - Chain 'B':
Compound: DNA (5'-d(*ap*gp*gp*tp*ap*ap*(mdj)p*ap*cp*cp*gp*t)-3')
Species: synthetic, synthetic
- Chain 'C':
Compound: DNA (5'-d(*ap*ap*cp*gp*gp*tp*ap*tp*tp*ap*cp*cp*t)-3')
Species: synthetic, synthetic
- Heterogens: FE, SIN, SCC, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3o1vA (A:)
mqeplaagavilrrfafnaaeqlirdindvasqspfrqmvtpggytmsvamtncghlgwt
thrqgylyspidpqtnkpwpampqsfhnlcqraataagypdfqpdaclinryapgaklcl
hqdkdepdlrapivsvslglpaifqfgglkrndplkrlllehgdvvvwggesrlfyhgiq
plkagfhpltidcrynltfrqagkke
Sequence, based on observed residues (ATOM records): (download)
>3o1vA (A:)
plaagavilrrfafnaaeqlirdindvasqspfrqmvtpggytmsvamtncghlgwtthr
qgylyspidpqtnkpwpampqsfhnlcqraataagypdfqpdaclinryapgaklclhqd
kdepdlrapivsvslglpaifqfgglkrndplkrlllehgdvvvwggesrlfyhgiqplk
agfhpltidcrynltfrqagkk
- Chain 'B':
No sequence available.
- Chain 'C':
No sequence available.