PDB entry 3o1m

View 3o1m on RCSB PDB site
Description: Iron-Catalyzed Oxidation Intermediates Captured in A DNA Repair Dioxygenase
Class: oxidoreductase
Keywords: Jelly-roll fold, Demethylase, OXIDOREDUCTASE
Deposited on 2010-07-21, released 2010-11-17
The last revision prior to the SCOPe 2.08 freeze date was dated 2014-05-28, with a file datestamp of 2014-05-23.
Experiment type: XRAY
Resolution: 1.75 Å
R-factor: 0.167
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Alpha-ketoglutarate-dependent dioxygenase AlkB
    Species: Escherichia coli [TaxId:83333]
    Gene: alkB, aidD, b2212, JW2200
    Database cross-references and differences (RAF-indexed):
    • Uniprot P05050
      • engineered mutation (118)
    Domains in SCOPe 2.08: d3o1ma_
  • Chain 'B':
    Compound: DNA (5'-d(*t*ap*gp*gp*tp*ap*ap*(me6)p*ap*cp*cp*gp*t)-3')
    Species: synthetic, synthetic
  • Chain 'C':
    Compound: DNA (5'-d(*ap*ap*cp*gp*gp*tp*ap*tp*tp*ap*cp*cp*t)-3')
    Species: synthetic, synthetic
  • Heterogens: MN, AKG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3o1mA (A:)
mqeplaagavilrrfafnaaeqlirdindvasqspfrqmvtpggytmsvamtncghlgwt
thrqgylyspidpqtnkpwpampqsfhnlcqraataagypdfqpdaclinryapgaklcl
hqdkdepdlrapivsvslglpaifqfgglkrndplkrlllehgdvvvwggesrlfyhgiq
plkagfhpltidcrynltfrqagkke

    Sequence, based on observed residues (ATOM records): (download) 
    >3o1mA (A:)
plaagavilrrfafnaaeqlirdindvasqspfrqmvtpggytmsvamtncghlgwtthr
qgylyspidpqtnkpwpampqsfhnlcqraataagypdfqpdaclinryapgaklclhqd
kdepdlrapivsvslglpaifqfgglkrndplkrlllehgdvvvwggesrlfyhgiqplk
agfhpltidcrynltfrqagk

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.