PDB entry 3nvi

View 3nvi on RCSB PDB site
Description: Structure of N-terminal truncated Nop56/58 bound with L7Ae and box C/D RNA
Class: Transferase/RNA
Keywords: Kink turn, ribosome biogenesis, Transferase-RNA complex
Deposited on 2010-07-08, released 2011-07-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-20, with a file datestamp of 2011-07-15.
Experiment type: XRAY
Resolution: 2.71 Å
R-factor: 0.21
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: NOP5/NOP56 related protein
    Species: Pyrococcus furiosus [TaxId:186497]
    Gene: PF0060
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3nvia_
  • Chain 'B':
    Compound: 50S ribosomal protein L7Ae
    Species: Pyrococcus furiosus [TaxId:186497]
    Gene: PF1367, rpl7ae
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: NOP5/NOP56 related protein
    Species: Pyrococcus furiosus [TaxId:186497]
    Gene: PF0060
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3nvic_
  • Chain 'D':
    Compound: 50S ribosomal protein L7Ae
    Species: Pyrococcus furiosus [TaxId:186497]
    Gene: PF1367, rpl7ae
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: RNA (5'-r(*cp*up*cp*up*gp*ap*cp*cp*gp*ap*ap*ap*gp*gp*cp*gp*up*gp*ap*up*gp*ap*gp*c)-3')
    Species: Pyrococcus furiosus [TaxId:186497]
  • Chain 'F':
    Compound: RNA (5'-r(*cp*up*cp*up*gp*ap*cp*cp*gp*ap*ap*ap*gp*gp*cp*gp*up*gp*ap*up*gp*ap*gp*c)-3')
    Species: Pyrococcus furiosus [TaxId:186497]
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3nviA (A:)
mhhhhhhvmimkafisenvrgiyafdengnliekryftdkpekvldqllkgeitkdleel
lnslkekgydefvfehpelsrrakelgfsattefpniagerlrsnpeeflgenwfeeyyk
vgvaltrmriqeqsgardkmviqaiealddvdkvinllvarlrewyslhfpeldellpkh
pqyvafvktvghrdnineevlrelglseekikkileakektmgawmdqtdievvrqlaee
idrlyqlrkkledyidramddvapnlkalvgaklaarlislagglrelammpsstiqvlg
aekalfrhlrtgakppkhgviyqypainrspwwqrgkiaralagklaiaarvdyfsgeyi
aeelkkelearireikeky

    Sequence, based on observed residues (ATOM records): (download) 
    >3nviA (A:)
qsgardkmviqaiealddvdkvinllvarlrewyslhfpeldellpkhpqyvafvktvgh
rdnineevlrelglseekikkileakektmgawmdqtdievvrqlaeeidrlyqlrkkle
dyidramddvapnlkalvgaklaarlislagglrelammpsstiqvlgaekalfrhlrtg
akppkhgviyqypainrspwwqrgkiaralagklaiaarvdyfsgeyiaeelkkeleari
reikeky

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3nviC (C:)
mhhhhhhvmimkafisenvrgiyafdengnliekryftdkpekvldqllkgeitkdleel
lnslkekgydefvfehpelsrrakelgfsattefpniagerlrsnpeeflgenwfeeyyk
vgvaltrmriqeqsgardkmviqaiealddvdkvinllvarlrewyslhfpeldellpkh
pqyvafvktvghrdnineevlrelglseekikkileakektmgawmdqtdievvrqlaee
idrlyqlrkkledyidramddvapnlkalvgaklaarlislagglrelammpsstiqvlg
aekalfrhlrtgakppkhgviyqypainrspwwqrgkiaralagklaiaarvdyfsgeyi
aeelkkelearireikeky

    Sequence, based on observed residues (ATOM records): (download) 
    >3nviC (C:)
qsgardkmviqaiealddvdkvinllvarlrewyslhfpeldellpkhpqyvafvktvgh
rdnineevlrelglseekikkileakektmgawmdqtdievvrqlaeeidrlyqlrkkle
dyidramddvapnlkalvgaklaarlislagglrelammpsstiqvlgaekalfrhlrtg
akppkhgviyqypainrspwwqrgkiaralagklaiaarvdyfsgeyiaeelkkeleari
reikeky

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.