PDB entry 3nrj

View 3nrj on RCSB PDB site
Description: Crystal structure of probable yrbi family phosphatase from pseudomonas syringae pv.phaseolica 1448a complexed with magnesium
Class: hydrolase
Keywords: structural genomics, psi, protein structure initiative, phosphatase, new york structural genomix research consortium, nysgxrc, hydrolase, new york sgx research center for structural genomics
Deposited on 2010-06-30, released 2010-07-28
The last revision prior to the SCOPe 2.07 freeze date was dated 2010-07-28, with a file datestamp of 2010-07-23.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.181
AEROSPACI score: 0.49 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: probable yrbi family phosphatase
    Species: Pseudomonas syringae pv. phaseolicola [TaxId:264730]
    Gene: PSPPH_4147
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q48EB9 (Start-180)
      • engineered (152)
      • expression tag (181-183)
    Domains in SCOPe 2.07: d3nrja1, d3nrja2
  • Chain 'B':
    Compound: probable yrbi family phosphatase
    Species: Pseudomonas syringae pv. phaseolicola [TaxId:264730]
    Gene: PSPPH_4147
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q48EB9 (Start-180)
      • engineered (152)
    Domains in SCOPe 2.07: d3nrjb_
  • Chain 'C':
    Compound: probable yrbi family phosphatase
    Species: Pseudomonas syringae pv. phaseolicola [TaxId:264730]
    Gene: PSPPH_4147
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q48EB9 (Start-180)
      • engineered (152)
      • expression tag (181)
    Domains in SCOPe 2.07: d3nrjc1, d3nrjc2
  • Chain 'D':
    Compound: probable yrbi family phosphatase
    Species: Pseudomonas syringae pv. phaseolicola [TaxId:264730]
    Gene: PSPPH_4147
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q48EB9 (Start-180)
      • engineered (152)
      • expression tag (181)
    Domains in SCOPe 2.07: d3nrjd1, d3nrjd2
  • Chain 'E':
    Compound: probable yrbi family phosphatase
    Species: Pseudomonas syringae pv. phaseolicola [TaxId:264730]
    Gene: PSPPH_4147
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q48EB9 (Start-180)
      • engineered (152)
      • expression tag (181)
    Domains in SCOPe 2.07: d3nrje1, d3nrje2
  • Chain 'F':
    Compound: probable yrbi family phosphatase
    Species: Pseudomonas syringae pv. phaseolicola [TaxId:264730]
    Gene: PSPPH_4147
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q48EB9 (Start-180)
      • engineered (152)
      • expression tag (181-183)
    Domains in SCOPe 2.07: d3nrjf1, d3nrjf2
  • Chain 'G':
    Compound: probable yrbi family phosphatase
    Species: Pseudomonas syringae pv. phaseolicola [TaxId:264730]
    Gene: PSPPH_4147
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q48EB9 (Start-180)
      • engineered (152)
      • expression tag (181)
    Domains in SCOPe 2.07: d3nrjg1, d3nrjg2
  • Chain 'H':
    Compound: probable yrbi family phosphatase
    Species: Pseudomonas syringae pv. phaseolicola [TaxId:264730]
    Gene: PSPPH_4147
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q48EB9 (Start-180)
      • engineered (152)
      • expression tag (181)
    Domains in SCOPe 2.07: d3nrjh1, d3nrjh2
  • Chain 'I':
    Compound: probable yrbi family phosphatase
    Species: Pseudomonas syringae pv. phaseolicola [TaxId:264730]
    Gene: PSPPH_4147
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q48EB9 (Start-180)
      • engineered (152)
      • expression tag (181)
    Domains in SCOPe 2.07: d3nrji1, d3nrji2
  • Chain 'J':
    Compound: probable yrbi family phosphatase
    Species: Pseudomonas syringae pv. phaseolicola [TaxId:264730]
    Gene: PSPPH_4147
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q48EB9 (Start-180)
      • engineered (152)
    Domains in SCOPe 2.07: d3nrjj_
  • Chain 'K':
    Compound: probable yrbi family phosphatase
    Species: Pseudomonas syringae pv. phaseolicola [TaxId:264730]
    Gene: PSPPH_4147
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q48EB9 (Start-180)
      • engineered (152)
    Domains in SCOPe 2.07: d3nrjk_
  • Chain 'L':
    Compound: probable yrbi family phosphatase
    Species: Pseudomonas syringae pv. phaseolicola [TaxId:264730]
    Gene: PSPPH_4147
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q48EB9 (Start-180)
      • engineered (152)
    Domains in SCOPe 2.07: d3nrjl_
  • Heterogens: CL, MG, PO4, UNL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >3nrjA (A:)
    msletetmsqdlmqrgkaiklavfdvdgvltdgrlyfmedgseiktfntldgqgikmlia
    sgvttaiisgrktaiverrakslgiehlfqgredklvvldkllaelqlgyeqvaylgddl
    pdlpvirrvglgmavanaasfvrehahgitraqggegaarefcelilsaqgnleaahsvy
    leghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3nrjA (A:)
    sqdlmqrgkaiklavfdvdgvltdgrlyfmedgseiktfntldgqgikmliasgvttaii
    sgrktaiverrakslgiehlfqgredklvvldkllaelqlgyeqvaylgddlpdlpvirr
    vglgmavanaasfvrehahgitraqggegaarefcelilsaqgnleaahsvylegh
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >3nrjB (B:)
    msletetmsqdlmqrgkaiklavfdvdgvltdgrlyfmedgseiktfntldgqgikmlia
    sgvttaiisgrktaiverrakslgiehlfqgredklvvldkllaelqlgyeqvaylgddl
    pdlpvirrvglgmavanaasfvrehahgitraqggegaarefcelilsaqgnleaahsvy
    leghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3nrjB (B:)
    sqdlmqrgkaiklavfdvdgvltdgrlyfmedgseiktfntldgqgikmliasgvttaii
    sgrktaiverrakslgiehlfqgredklvvldkllaelqlgyeqvaylgddlpdlpvirr
    vglgmavanaasfvrehahgitraqggegaarefcelilsaqgnleaahsvyl
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >3nrjC (C:)
    msletetmsqdlmqrgkaiklavfdvdgvltdgrlyfmedgseiktfntldgqgikmlia
    sgvttaiisgrktaiverrakslgiehlfqgredklvvldkllaelqlgyeqvaylgddl
    pdlpvirrvglgmavanaasfvrehahgitraqggegaarefcelilsaqgnleaahsvy
    leghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3nrjC (C:)
    qdlmqrgkaiklavfdvdgvltdgrlyfmedgseiktfntldgqgikmliasgvttaiis
    grktaiverrakslgiehlfqgredklvvldkllaelqlgyeqvaylgddlpdlpvirrv
    glgmavanaasfvrehahgitraqggegaarefcelilsaqgnleaahsvyle
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >3nrjD (D:)
    msletetmsqdlmqrgkaiklavfdvdgvltdgrlyfmedgseiktfntldgqgikmlia
    sgvttaiisgrktaiverrakslgiehlfqgredklvvldkllaelqlgyeqvaylgddl
    pdlpvirrvglgmavanaasfvrehahgitraqggegaarefcelilsaqgnleaahsvy
    leghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3nrjD (D:)
    dlmqrgkaiklavfdvdgvltdgrlyfmedgseiktfntldgqgikmliasgvttaiisg
    rktaiverrakslgiehlfqgredklvvldkllaelqlgyeqvaylgddlpdlpvirrvg
    lgmavanaasfvrehahgitraqggegaarefcelilsaqgnleaahsvyle
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >3nrjE (E:)
    msletetmsqdlmqrgkaiklavfdvdgvltdgrlyfmedgseiktfntldgqgikmlia
    sgvttaiisgrktaiverrakslgiehlfqgredklvvldkllaelqlgyeqvaylgddl
    pdlpvirrvglgmavanaasfvrehahgitraqggegaarefcelilsaqgnleaahsvy
    leghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3nrjE (E:)
    msqdlmqrgkaiklavfdvdgvltdgrlyfmedgseiktfntldgqgikmliasgvttai
    isgrktaiverrakslgiehlfqgredklvvldkllaelqlgyeqvaylgddlpdlpvir
    rvglgmavanaasfvrehahgitraqggegaarefcelilsaqgnleaahsvyle
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >3nrjF (F:)
    msletetmsqdlmqrgkaiklavfdvdgvltdgrlyfmedgseiktfntldgqgikmlia
    sgvttaiisgrktaiverrakslgiehlfqgredklvvldkllaelqlgyeqvaylgddl
    pdlpvirrvglgmavanaasfvrehahgitraqggegaarefcelilsaqgnleaahsvy
    leghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3nrjF (F:)
    dlmqrgkaiklavfdvdgvltdgrlyfmedgseiktfntldgqgikmliasgvttaiisg
    rktaiverrakslgiehlfqgredklvvldkllaelqlgyeqvaylgddlpdlpvirrvg
    lgmavanaasfvrehahgitraqggegaarefcelilsaqgnleaahsvylegh
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >3nrjG (G:)
    msletetmsqdlmqrgkaiklavfdvdgvltdgrlyfmedgseiktfntldgqgikmlia
    sgvttaiisgrktaiverrakslgiehlfqgredklvvldkllaelqlgyeqvaylgddl
    pdlpvirrvglgmavanaasfvrehahgitraqggegaarefcelilsaqgnleaahsvy
    leghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3nrjG (G:)
    qdlmqrgkaiklavfdvdgvltdgrlyfmedgseiktfntldgqgikmliasgvttaiis
    grktaiverrakslgiehlfqgredklvvldkllaelqlgyeqvaylgddlpdlpvirrv
    glgmavanaasfvrehahgitraqggegaarefcelilsaqgnleaahsvyle
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >3nrjH (H:)
    msletetmsqdlmqrgkaiklavfdvdgvltdgrlyfmedgseiktfntldgqgikmlia
    sgvttaiisgrktaiverrakslgiehlfqgredklvvldkllaelqlgyeqvaylgddl
    pdlpvirrvglgmavanaasfvrehahgitraqggegaarefcelilsaqgnleaahsvy
    leghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3nrjH (H:)
    dlmqrgkaiklavfdvdgvltdgrlyfmedgseiktfntldgqgikmliasgvttaiisg
    rktaiverrakslgiehlfqgredklvvldkllaelqlgyeqvaylgddlpdlpvirrvg
    lgmavanaasfvrehahgitraqggegaarefcelilsaqgnleaahsvyle
    

  • Chain 'I':
    Sequence, based on SEQRES records: (download)
    >3nrjI (I:)
    msletetmsqdlmqrgkaiklavfdvdgvltdgrlyfmedgseiktfntldgqgikmlia
    sgvttaiisgrktaiverrakslgiehlfqgredklvvldkllaelqlgyeqvaylgddl
    pdlpvirrvglgmavanaasfvrehahgitraqggegaarefcelilsaqgnleaahsvy
    leghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3nrjI (I:)
    etmsqdlmqrgkaiklavfdvdgvltdgrlyfmedgseiktfntldgqgikmliasgvtt
    aiisgrktaiverrakslgiehlfqgredklvvldkllaelqlgyeqvaylgddlpdlpv
    irrvglgmavanaasfvrehahgitraqggegaarefcelilsaqgnleaahsvyle
    

  • Chain 'J':
    Sequence, based on SEQRES records: (download)
    >3nrjJ (J:)
    msletetmsqdlmqrgkaiklavfdvdgvltdgrlyfmedgseiktfntldgqgikmlia
    sgvttaiisgrktaiverrakslgiehlfqgredklvvldkllaelqlgyeqvaylgddl
    pdlpvirrvglgmavanaasfvrehahgitraqggegaarefcelilsaqgnleaahsvy
    leghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3nrjJ (J:)
    qdlmqrgkaiklavfdvdgvltdgrlyfmedgseiktfntldgqgikmliasgvttaiis
    grktaiverrakslgiehlfqgredklvvldkllaelqlgyeqvaylgddlpdlpvirrv
    glgmavanaasfvrehahgitraqggegaarefcelilsaqgnleaahsvyl
    

  • Chain 'K':
    Sequence, based on SEQRES records: (download)
    >3nrjK (K:)
    msletetmsqdlmqrgkaiklavfdvdgvltdgrlyfmedgseiktfntldgqgikmlia
    sgvttaiisgrktaiverrakslgiehlfqgredklvvldkllaelqlgyeqvaylgddl
    pdlpvirrvglgmavanaasfvrehahgitraqggegaarefcelilsaqgnleaahsvy
    leghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3nrjK (K:)
    qdlmqrgkaiklavfdvdgvltdgrlyfmedgseiktfntldgqgikmliasgvttaiis
    grktaiverrakslgiehlfqgredklvvldkllaelqlgyeqvaylgddlpdlpvirrv
    glgmavanaasfvrehahgitraqggegaarefcelilsaqgnleaahsvyl
    

  • Chain 'L':
    Sequence, based on SEQRES records: (download)
    >3nrjL (L:)
    msletetmsqdlmqrgkaiklavfdvdgvltdgrlyfmedgseiktfntldgqgikmlia
    sgvttaiisgrktaiverrakslgiehlfqgredklvvldkllaelqlgyeqvaylgddl
    pdlpvirrvglgmavanaasfvrehahgitraqggegaarefcelilsaqgnleaahsvy
    leghhhhhh
    

    Sequence, based on observed residues (ATOM records): (download)
    >3nrjL (L:)
    qdlmqrgkaiklavfdvdgvltdgrlyfmedgseiktfntldgqgikmliasgvttaiis
    grktaiverrakslgiehlfqgredklvvldkllaelqlgyeqvaylgddlpdlpvirrv
    glgmavanaasfvrehahgitraqggegaarefcelilsaqgnleaahsvyl