PDB entry 3nob

View 3nob on RCSB PDB site
Description: Structure of K11-linked di-ubiquitin
Class: protein binding
Keywords: Ubiquitin Lysine-11, PROTEIN BINDING
Deposited on 2010-06-25, released 2010-08-11
The last revision prior to the SCOPe 2.06 freeze date was dated 2014-04-02, with a file datestamp of 2014-03-28.
Experiment type: XRAY
Resolution: 2.19 Å
R-factor: 0.247
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: RPS27A, UBA80, UBCEP1, UBA52, UBB, UBC
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62988 (2-End)
      • expression tag (0-1)
    Domains in SCOPe 2.06: d3noba1, d3noba2
  • Chain 'B':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: RPS27A, UBA80, UBCEP1, UBA52, UBB, UBC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3nobb_
  • Chain 'C':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: RPS27A, UBA80, UBCEP1, UBA52, UBB, UBC
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62988 (2-End)
      • expression tag (1)
    Domains in SCOPe 2.06: d3nobc1, d3nobc2
  • Chain 'D':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: RPS27A, UBA80, UBCEP1, UBA52, UBB, UBC
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62988 (2-End)
      • expression tag (1)
    Domains in SCOPe 2.06: d3nobd1, d3nobd2
  • Chain 'E':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: RPS27A, UBA80, UBCEP1, UBA52, UBB, UBC
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62988 (2-End)
      • expression tag (1)
    Domains in SCOPe 2.06: d3nobe1, d3nobe2
  • Chain 'F':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: RPS27A, UBA80, UBCEP1, UBA52, UBB, UBC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3nobf_
  • Chain 'G':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: RPS27A, UBA80, UBCEP1, UBA52, UBB, UBC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3nobg_
  • Chain 'H':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: RPS27A, UBA80, UBCEP1, UBA52, UBB, UBC
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62988 (2-77)
      • expression tag (1)
    Domains in SCOPe 2.06: d3nobh1, d3nobh2
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3nobA (A:)
shmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >3nobA (A:)
shmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3nobB (B:)
shmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >3nobB (B:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3nobC (C:)
shmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >3nobC (C:)
hmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdy
niqkestlhlvlrlr

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3nobD (D:)
shmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >3nobD (D:)
hmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdy
niqkestlhlvlrlr

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3nobE (E:)
shmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >3nobE (E:)
hmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdy
niqkestlhlvlrlr

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3nobF (F:)
shmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >3nobF (F:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgg

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3nobG (G:)
shmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >3nobG (G:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrg

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >3nobH (H:)
shmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records): (download) 
    >3nobH (H:)
hmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdy
niqkestlhlvlrlrgg