PDB entry 3nke

View 3nke on RCSB PDB site
Description: High resolution structure of the C-terminal domain CRISP-associated protein Cas1 from Escherichia coli str. K-12
Class: immune system
Keywords: CRISPR, Cas1, YgbT, Nuclease, DNA recombination, DNA repair, IMMUNE SYSTEM
Deposited on 2010-06-18, released 2010-08-25
The last revision prior to the SCOPe 2.08 freeze date was dated 2014-12-17, with a file datestamp of 2014-12-12.
Experiment type: XRAY
Resolution: 1.4 Å
R-factor: 0.178
AEROSPACI score: 0.61 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: protein ygbT
    Species: Escherichia coli [TaxId:83333]
    Gene: ygbT, b2755, JW2725
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3nkea_
  • Chain 'B':
    Compound: protein ygbT
    Species: Escherichia coli [TaxId:83333]
    Gene: ygbT, b2755, JW2725
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3nkeb_
  • Chain 'C':
    Compound: protein ygbT
    Species: Escherichia coli [TaxId:83333]
    Gene: ygbT, b2755, JW2725
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3nkec_
  • Heterogens: EDO, SO3, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3nkeA (A:)
ggarsdkllyqaklaldedlrlkvvrkmfelrfgepaparrsveqlrgiegsrvratyal
lakqygvtwngrrydpkdwekgdtinqcisaatsclygvteaailaagyapaigfvhtgk
plsfvydiadiikfdtvvpkafeiarrnpgepdrevrlacrdifrssktlaklipliedv
laageiqppappedaqpvai

    Sequence, based on observed residues (ATOM records): (download) 
    >3nkeA (A:)
arsdkllyqaklaldedlrlkvvrkmfelrfgepaparrsveqlrgiegsrvratyalla
kqygvtwngrrydekgdtinqcisaatsclygvteaailaagyapaigfvhtgkplsfvy
diadiikfdtvvpkafeiarrnpgepdrevrlacrdifrssktlaklipliedvlaagei
qpp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3nkeB (B:)
ggarsdkllyqaklaldedlrlkvvrkmfelrfgepaparrsveqlrgiegsrvratyal
lakqygvtwngrrydpkdwekgdtinqcisaatsclygvteaailaagyapaigfvhtgk
plsfvydiadiikfdtvvpkafeiarrnpgepdrevrlacrdifrssktlaklipliedv
laageiqppappedaqpvai

    Sequence, based on observed residues (ATOM records): (download) 
    >3nkeB (B:)
ggarsdkllyqaklaldedlrlkvvrkmfelrfgepaparrsveqlrgiegsrvratyal
lakqygvtwngrrkgdtinqcisaatsclygvteaailaagyapaigfvhtgkplsfvyd
iadiikfdtvvpkafeiarrnpgepdrevrlacrdifrssktlaklipliedvlaageiq
ppa

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3nkeC (C:)
ggarsdkllyqaklaldedlrlkvvrkmfelrfgepaparrsveqlrgiegsrvratyal
lakqygvtwngrrydpkdwekgdtinqcisaatsclygvteaailaagyapaigfvhtgk
plsfvydiadiikfdtvvpkafeiarrnpgepdrevrlacrdifrssktlaklipliedv
laageiqppappedaqpvai

    Sequence, based on observed residues (ATOM records): (download) 
    >3nkeC (C:)
ggarsdkllyqaklaldedlrlkvvrkmfelrfgepaparrsveqlrgiegsrvratyal
lakqygvtwngrrydtinqcisaatsclygvteaailaagyapaigfvhtgkplsfvydi
adiikfdtvvpkafeiarrnpgepdrevrlacrdifrssktlaklipliedvlaageiqp
pa