SCOPe 2.03: Structural Classification of Proteins

PDB entry 3ngt

View 3ngt on RCSB PDB site
Description: Structure of Leishmania NDKb complexed with AMP.
Class: transferase
Keywords: LmNDKb, AMP, TRANSFERASE
Deposited on 2010-06-13, released 2011-04-27
The last revision prior to the SCOPe 2.03 freeze date was dated 2011-06-29, with a file datestamp of 2011-06-24.
Experiment type: XRAY
Resolution: 2.57 Å
R-factor: 0.241
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Nucleoside diphosphate kinase
Species: Leishmania major [TaxId:5664]
Gene: L1648.07, LmjF32.2950, NDKb
Database cross-references and differences (RAF-indexed):
- Uniprot Q9U1E1 (Start-150)
Domains in SCOPe 2.03: d3ngta_
Chain 'B':
Compound: Nucleoside diphosphate kinase
Species: Leishmania major [TaxId:5664]
Gene: L1648.07, LmjF32.2950, NDKb
Database cross-references and differences (RAF-indexed):
- Uniprot Q9U1E1 (Start-150)
Domains in SCOPe 2.03: d3ngtb_
Chain 'C':
Compound: Nucleoside diphosphate kinase
Species: Leishmania major [TaxId:5664]
Gene: L1648.07, LmjF32.2950, NDKb
Database cross-references and differences (RAF-indexed):
- Uniprot Q9U1E1 (Start-150)
Domains in SCOPe 2.03: d3ngtc_
Chain 'D':
Compound: Nucleoside diphosphate kinase
Species: Leishmania major [TaxId:5664]
Gene: L1648.07, LmjF32.2950, NDKb
Database cross-references and differences (RAF-indexed):
- Uniprot Q9U1E1 (Start-150)
Domains in SCOPe 2.03: d3ngtd_
Chain 'E':
Compound: Nucleoside diphosphate kinase
Species: Leishmania major [TaxId:5664]
Gene: L1648.07, LmjF32.2950, NDKb
Database cross-references and differences (RAF-indexed):
- Uniprot Q9U1E1 (Start-150)
Domains in SCOPe 2.03: d3ngte_
Chain 'F':
Compound: Nucleoside diphosphate kinase
Species: Leishmania major [TaxId:5664]
Gene: L1648.07, LmjF32.2950, NDKb
Database cross-references and differences (RAF-indexed):
- Uniprot Q9U1E1 (Start-150)
Domains in SCOPe 2.03: d3ngtf_
Chain 'G':
Compound: Nucleoside diphosphate kinase
Species: Leishmania major [TaxId:5664]
Gene: L1648.07, LmjF32.2950, NDKb
Database cross-references and differences (RAF-indexed):
- Uniprot Q9U1E1 (Start-150)
Domains in SCOPe 2.03: d3ngtg_
Chain 'H':
Compound: Nucleoside diphosphate kinase
Species: Leishmania major [TaxId:5664]
Gene: L1648.07, LmjF32.2950, NDKb
Database cross-references and differences (RAF-indexed):
- Uniprot Q9U1E1 (Start-150)
Domains in SCOPe 2.03: d3ngth_
Chain 'I':
Compound: Nucleoside diphosphate kinase
Species: Leishmania major [TaxId:5664]
Gene: L1648.07, LmjF32.2950, NDKb
Database cross-references and differences (RAF-indexed):
- Uniprot Q9U1E1 (Start-150)
Domains in SCOPe 2.03: d3ngti_
Chain 'J':
Compound: Nucleoside diphosphate kinase
Species: Leishmania major [TaxId:5664]
Gene: L1648.07, LmjF32.2950, NDKb
Database cross-references and differences (RAF-indexed):
- Uniprot Q9U1E1
Domains in SCOPe 2.03: d3ngtj_
Chain 'K':
Compound: Nucleoside diphosphate kinase
Species: Leishmania major [TaxId:5664]
Gene: L1648.07, LmjF32.2950, NDKb
Database cross-references and differences (RAF-indexed):
- Uniprot Q9U1E1 (Start-150)
Domains in SCOPe 2.03: d3ngtk_
Chain 'L':
Compound: Nucleoside diphosphate kinase
Species: Leishmania major [TaxId:5664]
Gene: L1648.07, LmjF32.2950, NDKb
Database cross-references and differences (RAF-indexed):
- Uniprot Q9U1E1
Domains in SCOPe 2.03: d3ngtl_
Chain 'M':
Compound: Nucleoside diphosphate kinase
Species: Leishmania major [TaxId:5664]
Gene: L1648.07, LmjF32.2950, NDKb
Database cross-references and differences (RAF-indexed):
- Uniprot Q9U1E1 (Start-150)
Domains in SCOPe 2.03: d3ngtm_
Chain 'N':
Compound: Nucleoside diphosphate kinase
Species: Leishmania major [TaxId:5664]
Gene: L1648.07, LmjF32.2950, NDKb
Database cross-references and differences (RAF-indexed):
- Uniprot Q9U1E1 (Start-150)
Domains in SCOPe 2.03: d3ngtn_
Heterogens: AMP, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>3ngtA (A:)
mssertfiavkpdgvqrglvgeiiarferkgyklvalkilqptteqaqghykdlcskpff
palvkyfssgpivcmvwegknvvksgrvllgatnpadsqpgtirgdfavdvgrnvchgsd
svesaereiafwfkadeiaswtshsvsqiye