PDB entry 3ngs

View 3ngs on RCSB PDB site
Description: Structure of Leishmania nucleoside diphosphate kinase b with ordered nucleotide-binding loop
Class: transferase
Keywords: LmNDKb, phosphate ion, ordered nucleotide-binding loop, TRANSFERASE
Deposited on 2010-06-13, released 2011-04-27
The last revision prior to the SCOPe 2.02 freeze date was dated 2011-06-29, with a file datestamp of 2011-06-24.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.181
AEROSPACI score: 0.54 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nucleoside diphosphate kinase
    Species: Leishmania major [TaxId:5664]
    Gene: L1648.07, LmjF32.2950, NDKb
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d3ngsa_
  • Chain 'B':
    Compound: Nucleoside diphosphate kinase
    Species: Leishmania major [TaxId:5664]
    Gene: L1648.07, LmjF32.2950, NDKb
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d3ngsb_
  • Chain 'C':
    Compound: Nucleoside diphosphate kinase
    Species: Leishmania major [TaxId:5664]
    Gene: L1648.07, LmjF32.2950, NDKb
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d3ngsc_
  • Heterogens: PO4, DTT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3ngsA (A:)
mssertfiavkpdgvqrglvgeiiarferkgyklvalkilqptteqaqghykdlcskpff
palvkyfssgpivcmvwegknvvksgrvllgatnpadsqpgtirgdfavdvgrnvchgsd
svesaereiafwfkadeiaswtshsvsqiye

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3ngsB (B:)
mssertfiavkpdgvqrglvgeiiarferkgyklvalkilqptteqaqghykdlcskpff
palvkyfssgpivcmvwegknvvksgrvllgatnpadsqpgtirgdfavdvgrnvchgsd
svesaereiafwfkadeiaswtshsvsqiye

    Sequence, based on observed residues (ATOM records): (download) 
    >3ngsB (B:)
ssertfiavkpdgvqrglvgeiiarferkgyklvalkilqptteqaqghykdlcskpffp
alvkyfssgpivcmvwegknvvksgrvllgatnpadsqpgtirgdfavdvgrnvchgsds
vesaereiafwfkadeiaswtshsvsqiye

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3ngsC (C:)
mssertfiavkpdgvqrglvgeiiarferkgyklvalkilqptteqaqghykdlcskpff
palvkyfssgpivcmvwegknvvksgrvllgatnpadsqpgtirgdfavdvgrnvchgsd
svesaereiafwfkadeiaswtshsvsqiye