PDB entry 3ndu
View 3ndu on RCSB PDB site
Description: HIV-1 Protease Saquinavir:Ritonavir 1:5 complex structure
Class: hydrolase/hydrolase inhibitor
Keywords: HIV-1 PROTEASE, HYDROLASE, AIDS, ASPARTYL PROTEASE, SAQUINAVIR, CARBAMYLATION, hydrolase-hydrolase inhibitor complex
Deposited on
2010-06-08, released
2011-07-20
The last revision prior to the SCOPe 2.04 freeze date was dated
2011-12-07, with a file datestamp of
2011-12-02.
Experiment type: XRAY
Resolution: 1.25 Å
R-factor: 0.142
AEROSPACI score: 0.81
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Protease
Species: Human immunodeficiency virus 1 [TaxId:11676]
Gene: pol
Database cross-references and differences (RAF-indexed):
- Uniprot Q7SSI0 (0-98)
- insertion (0)
- engineered mutation (7)
- engineered mutation (33)
- engineered mutation (63)
- engineered mutation (67)
- engineered mutation (95)
- engineered mutation (6)
- engineered mutation (32)
- engineered mutation (62)
- engineered mutation (66)
- engineered mutation (94)
Domains in SCOPe 2.04: d3ndua_ - Chain 'B':
Compound: Protease
Species: Human immunodeficiency virus 1 [TaxId:11676]
Gene: pol
Database cross-references and differences (RAF-indexed):
- Uniprot Q7SSI0 (0-98)
- insertion (0)
- engineered mutation (7)
- engineered mutation (33)
- engineered mutation (63)
- engineered mutation (67)
- engineered mutation (95)
- engineered mutation (6)
- engineered mutation (32)
- engineered mutation (62)
- engineered mutation (66)
- engineered mutation (94)
Domains in SCOPe 2.04: d3ndub_ - Chain 'C':
Compound: Protease
Species: Human immunodeficiency virus 1 [TaxId:11676]
Gene: pol
Database cross-references and differences (RAF-indexed):
- Uniprot Q7SSI0 (1-99)
- insertion (1)
- engineered mutation (8)
- engineered mutation (34)
- engineered mutation (64)
- engineered mutation (68)
- engineered mutation (96)
- engineered mutation (7)
- engineered mutation (33)
- engineered mutation (63)
- engineered mutation (67)
- engineered mutation (95)
Domains in SCOPe 2.04: d3nduc_ - Chain 'D':
Compound: Protease
Species: Human immunodeficiency virus 1 [TaxId:11676]
Gene: pol
Database cross-references and differences (RAF-indexed):
- Uniprot Q7SSI0 (1-99)
- insertion (1)
- engineered mutation (8)
- engineered mutation (34)
- engineered mutation (64)
- engineered mutation (68)
- engineered mutation (96)
- engineered mutation (7)
- engineered mutation (33)
- engineered mutation (63)
- engineered mutation (67)
- engineered mutation (95)
Domains in SCOPe 2.04: d3ndud_ - Heterogens: ROC, DMS, ACT, CL, GOL, NA, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>3nduA (A:)
xpqitlwkrplvtikiggqlkealldtgaddtvieemslpgrwkpkmiggiggfikvrqy
dqiiieiaghkaigtvlvgptpvniigrnlltqigatlnf
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>3nduB (B:)
xpqitlwkrplvtikiggqlkealldtgaddtvieemslpgrwkpkmiggiggfikvrqy
dqiiieiaghkaigtvlvgptpvniigrnlltqigatlnf
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3nduC (C:)
xpqitlwkrplvtikiggqlkealldtgaddtvieemslpgrwkpkmiggiggfikvrqy
dqiiieiaghkaigtvlvgptpvniigrnlltqigatlnf
Sequence, based on observed residues (ATOM records): (download)
>3nduC (C:)
pqitlwkrplvtikiggqlkealldtgaddtvieemslpgrwkpkmiggiggfikvrqyd
qiiieiaghkaigtvlvgptpvniigrnlltqigatlnf
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3nduD (D:)
xpqitlwkrplvtikiggqlkealldtgaddtvieemslpgrwkpkmiggiggfikvrqy
dqiiieiaghkaigtvlvgptpvniigrnlltqigatlnf
Sequence, based on observed residues (ATOM records): (download)
>3nduD (D:)
pqitlwkrplvtikiggqlkealldtgaddtvieemslpgrwkpkmiggiggfikvrqyd
qiiieiaghkaigtvlvgptpvniigrnlltqigatlnf