PDB entry 3ndo
View 3ndo on RCSB PDB site
Description: Crystal structure of deoxyribose phosphate aldolase from mycobacterium smegmatis
Class: lyase
Keywords: SSGCID, NIH, NIAID, SBRI, UW, EMERALD BIOSTRUCTURES, ALS COLLABORATIVE CRYSTALLOGRAPHY, DEOXYRIBOSEPHOSPHATE ALDOLASE, MYCOBACTERIUM SMEGMATIS, Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, LYASE
Deposited on
2010-06-07, released
2010-07-21
The last revision prior to the SCOPe 2.05 freeze date was dated
2010-07-21, with a file datestamp of
2010-07-16.
Experiment type: XRAY
Resolution: 1.25 Å
R-factor: 0.124
AEROSPACI score: 0.84
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: deoxyribose-phosphate aldolase
Species: Mycobacterium smegmatis [TaxId:1772]
Gene: deoC, MSMEG_0922
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3ndoa_ - Chain 'B':
Compound: deoxyribose-phosphate aldolase
Species: Mycobacterium smegmatis [TaxId:1772]
Gene: deoC, MSMEG_0922
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.05: d3ndob_ - Heterogens: NH4, UNL, GOL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3ndoA (A:)
gpgsmtdhtraqvaalvdhtllkpeatpsdvtalvdeaadlgvfavcvspplvsvaagva
psglaiaavagfpsgkhvpgikateaelavaagateidmvidvgaalagdldavsadita
vrkavraatlkvivesaallefsgeplladvcrvardagadfvktstgfhpsggasvqav
eimartvgerlgvkasggirtaeqaaamldagatrlglsgsravldgfgsa
Sequence, based on observed residues (ATOM records): (download)
>3ndoA (A:)
dhtraqvaalvdhtllkpeatpsdvtalvdeaadlgvfavcvspplvsvaagvapsglai
aavagfpsgkhvpgikateaelavaagateidmvidvgaalagdldavsaditavrkavr
aatlkvivesaallefsgeplladvcrvardagadfvktstgfhpsggasvqaveimart
vgerlgvkasggirtaeqaaamldagatrlglsgsravldgfgsa
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3ndoB (B:)
gpgsmtdhtraqvaalvdhtllkpeatpsdvtalvdeaadlgvfavcvspplvsvaagva
psglaiaavagfpsgkhvpgikateaelavaagateidmvidvgaalagdldavsadita
vrkavraatlkvivesaallefsgeplladvcrvardagadfvktstgfhpsggasvqav
eimartvgerlgvkasggirtaeqaaamldagatrlglsgsravldgfgsa
Sequence, based on observed residues (ATOM records): (download)
>3ndoB (B:)
dhtraqvaalvdhtllkpeatpsdvtalvdeaadlgvfavcvspplvsvaagvapsglai
aavagfpsgkhvpgikateaelavaagateidmvidvgaalagdldavsaditavrkavr
aatlkvivesaallefsgeplladvcrvardagadfvktstgfhpsggasvqaveimart
vgerlgvkasggirtaeqaaamldagatrlglsgsravldgfgsa