PDB entry 3ndn

View 3ndn on RCSB PDB site
Description: Crystal structure of O-succinylhomoserine sulfhydrylase from Mycobacterium tuberculosis covalently bound to pyridoxal-5-phosphate
Class: lyase
Keywords: Seattle Structural Genomics Center for Infectious Disease, SSGCID, mycobacterium, tuberculosis, PLP, Schiff base, transamination, LYASE
Deposited on 2010-06-07, released 2010-06-16
The last revision prior to the SCOPe 2.07 freeze date was dated 2015-04-22, with a file datestamp of 2015-04-17.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: O-succinylhomoserine sulfhydrylase
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Gene: metZ, MT0402, Rv0391
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ndna_
  • Chain 'B':
    Compound: O-succinylhomoserine sulfhydrylase
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Gene: metZ, MT0402, Rv0391
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ndnb_
  • Chain 'C':
    Compound: O-succinylhomoserine sulfhydrylase
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Gene: metZ, MT0402, Rv0391
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ndnc_
  • Chain 'D':
    Compound: O-succinylhomoserine sulfhydrylase
    Species: Mycobacterium tuberculosis [TaxId:1773]
    Gene: metZ, MT0402, Rv0391
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ndnd_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3ndnA (A:)
mahhhhhhmtdessvrtpkalpdgvsqatvgvrggmlrsgfeetaeamyltsgyvygsaa
vaeksfageldhyvysrygnptvsvfeerlrliegapaafatasgmaavftslgallgag
drlvaarslfgscfvvcseilprwgvqtvfvdgddlsqweralsvptqavffetpsnpmq
slvdiaavtelahaagakvvldnvfatpllqqgfplgvdvvvysgtkhidgqgrvlggai
lgdreyidgpvqklmrhtgpamsafnawvllkgletlairvqhsnasaqriaeflnghps
vrwvrypylpshpqydlakrqmsgggtvvtfaldcpedvakqrafevldkmrlidisnnl
gdakslvthpattthramgpegraaiglgdgvvrisvgledtddliadidrals

    Sequence, based on observed residues (ATOM records): (download) 
    >3ndnA (A:)
svrtpkalpdgvsqatvgvrggmlrsgfeetaeamyltsgyvygsaavaeksfageldhy
vysrygnptvsvfeerlrliegapaafatasgmaavftslgallgagdrlvaarslfgsc
fvvcseilprwgvqtvfvdgddlsqweralsvptqavffetpsnpmqslvdiaavtelah
aagakvvldnvfatpllqqgfplgvdvvvysgtkhidgqgrvlggailgdreyidgpvqk
lmrhtgpamsafnawvllkgletlairvqhsnasaqriaeflnghpsvrwvrypylpshp
qydlakrqmsgggtvvtfaldcpedvakqrafevldkmrlidisnnlgdakslvthpatt
thramgpegraaiglgdgvvrisvgledtddliadidrals

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3ndnB (B:)
mahhhhhhmtdessvrtpkalpdgvsqatvgvrggmlrsgfeetaeamyltsgyvygsaa
vaeksfageldhyvysrygnptvsvfeerlrliegapaafatasgmaavftslgallgag
drlvaarslfgscfvvcseilprwgvqtvfvdgddlsqweralsvptqavffetpsnpmq
slvdiaavtelahaagakvvldnvfatpllqqgfplgvdvvvysgtkhidgqgrvlggai
lgdreyidgpvqklmrhtgpamsafnawvllkgletlairvqhsnasaqriaeflnghps
vrwvrypylpshpqydlakrqmsgggtvvtfaldcpedvakqrafevldkmrlidisnnl
gdakslvthpattthramgpegraaiglgdgvvrisvgledtddliadidrals

    Sequence, based on observed residues (ATOM records): (download) 
    >3ndnB (B:)
svrtpkalpdgvsqatvgvrggmlrsgfeetaeamyltsgyvygsaavaeksfageldhy
vysrygnptvsvfeerlrliegapaafatasgmaavftslgallgagdrlvaarslfgsc
fvvcseilprwgvqtvfvdgddlsqweralsvptqavffetpsnpmqslvdiaavtelah
aagakvvldnvfatpllqqgfplgvdvvvysgtkhidgqgrvlggailgdreyidgpvqk
lmrhtgpamsafnawvllkgletlairvqhsnasaqriaeflnghpsvrwvrypylpshp
qydlakrqmsgggtvvtfaldcpedvakqrafevldkmrlidisnnlgdakslvthpatt
thramgpegraaiglgdgvvrisvgledtddliadidrals

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3ndnC (C:)
mahhhhhhmtdessvrtpkalpdgvsqatvgvrggmlrsgfeetaeamyltsgyvygsaa
vaeksfageldhyvysrygnptvsvfeerlrliegapaafatasgmaavftslgallgag
drlvaarslfgscfvvcseilprwgvqtvfvdgddlsqweralsvptqavffetpsnpmq
slvdiaavtelahaagakvvldnvfatpllqqgfplgvdvvvysgtkhidgqgrvlggai
lgdreyidgpvqklmrhtgpamsafnawvllkgletlairvqhsnasaqriaeflnghps
vrwvrypylpshpqydlakrqmsgggtvvtfaldcpedvakqrafevldkmrlidisnnl
gdakslvthpattthramgpegraaiglgdgvvrisvgledtddliadidrals

    Sequence, based on observed residues (ATOM records): (download) 
    >3ndnC (C:)
svrtpkalpdgvsqatvgvrggmlrsgfeetaeamyltsgyvygsaavaeksfageldhy
vysrygnptvsvfeerlrliegapaafatasgmaavftslgallgagdrlvaarslfgsc
fvvcseilprwgvqtvfvdgddlsqweralsvptqavffetpsnpmqslvdiaavtelah
aagakvvldnvfatpllqqgfplgvdvvvysgtkhidgqgrvlggailgdreyidgpvqk
lmrhtgpamsafnawvllkgletlairvqhsnasaqriaeflnghpsvrwvrypylpshp
qydlakrqmsgggtvvtfaldcpedvakqrafevldkmrlidisnnlgdakslvthpatt
thramgpegraaiglgdgvvrisvgledtddliadidrals

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3ndnD (D:)
mahhhhhhmtdessvrtpkalpdgvsqatvgvrggmlrsgfeetaeamyltsgyvygsaa
vaeksfageldhyvysrygnptvsvfeerlrliegapaafatasgmaavftslgallgag
drlvaarslfgscfvvcseilprwgvqtvfvdgddlsqweralsvptqavffetpsnpmq
slvdiaavtelahaagakvvldnvfatpllqqgfplgvdvvvysgtkhidgqgrvlggai
lgdreyidgpvqklmrhtgpamsafnawvllkgletlairvqhsnasaqriaeflnghps
vrwvrypylpshpqydlakrqmsgggtvvtfaldcpedvakqrafevldkmrlidisnnl
gdakslvthpattthramgpegraaiglgdgvvrisvgledtddliadidrals

    Sequence, based on observed residues (ATOM records): (download) 
    >3ndnD (D:)
svrtpkalpdgvsqatvgvrggmlrsgfeetaeamyltsgyvygsaavaeksfageldhy
vysrygnptvsvfeerlrliegapaafatasgmaavftslgallgagdrlvaarslfgsc
fvvcseilprwgvqtvfvdgddlsqweralsvptqavffetpsnpmqslvdiaavtelah
aagakvvldnvfatpllqqgfplgvdvvvysgtkhidgqgrvlggailgdreyidgpvqk
lmrhtgpamsafnawvllkgletlairvqhsnasaqriaeflnghpsvrwvrypylpshp
qydlakrqmsgggtvvtfaldcpedvakqrafevldkmrlidisnnlgdakslvthpatt
thramgpegraaiglgdgvvrisvgledtddliadidrals