PDB entry 3n4p

View 3n4p on RCSB PDB site
Description: Human cytomegalovirus terminase nuclease domain
Deposited on 2010-05-22, released 2010-10-06
The last revision was dated 2010-10-06, with a file datestamp of 2010-10-01.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: 0.222
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: terminase subunit ul89 protein
    Species: Human herpesvirus 5 [TaxId:10363]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: terminase subunit ul89 protein
    Species: Human herpesvirus 5 [TaxId:10363]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: terminase subunit ul89 protein
    Species: Human herpesvirus 5 [TaxId:10363]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: terminase subunit ul89 protein
    Species: Human herpesvirus 5 [TaxId:10363]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.07, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >3n4pA (A:)
    mghhhhhhdydipttenlyfqgggtnkisqntvlitdqsreefdilrystlntnaydyfg
    ktlyvyldpafttnrkasgtgvaavgayrhqfliyglehfflrdlsessevaiaecaahm
    iisvlslhpyldelriavegntnqaaavriaclirqsvqsstlirvlfyhtpdqnhieqp
    fylmgrdkalaveqfisrfnsgyikasqelvsytiklshdpieylleqiqnlhrvtlaeg
    ttarysakrqnrisddliiavimatylcddihairfrvs
    

    Sequence, based on observed residues (ATOM records):
    >3n4pA (A:)
    litdqsreefdilrystlntnaydyfgktlyvyldpagtgvaavgayrhqfliyglehff
    lsessevaiaecaahmiisvlslhpyldelriavegntnqaaavriaclirqsvqsstli
    rvlfyhtpdqnhieqpfylmgrdkalaveqfisrfnsgyikasqelvsytiklshdpiey
    lleqiqnlhrsddliiavimatylcddihairfrvs
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >3n4pB (B:)
    mghhhhhhdydipttenlyfqgggtnkisqntvlitdqsreefdilrystlntnaydyfg
    ktlyvyldpafttnrkasgtgvaavgayrhqfliyglehfflrdlsessevaiaecaahm
    iisvlslhpyldelriavegntnqaaavriaclirqsvqsstlirvlfyhtpdqnhieqp
    fylmgrdkalaveqfisrfnsgyikasqelvsytiklshdpieylleqiqnlhrvtlaeg
    ttarysakrqnrisddliiavimatylcddihairfrvs
    

    Sequence, based on observed residues (ATOM records):
    >3n4pB (B:)
    litdqsreefdilrystlntnaydyfgktlyvyldpafttnrkasgtgvaavgayrhqfl
    iyglehfflessevaiaecaahmiisvlslhpyldelriavegntnqaaavriaclirqs
    vqsstlirvlfyhtpdqnhieqpfylmgrdkalaveqfisrfnsgyikasqelvsytikl
    shdpieylleqiqnlhrvnrisddliiavimatylcddihairfrvs
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >3n4pC (C:)
    mghhhhhhdydipttenlyfqgggtnkisqntvlitdqsreefdilrystlntnaydyfg
    ktlyvyldpafttnrkasgtgvaavgayrhqfliyglehfflrdlsessevaiaecaahm
    iisvlslhpyldelriavegntnqaaavriaclirqsvqsstlirvlfyhtpdqnhieqp
    fylmgrdkalaveqfisrfnsgyikasqelvsytiklshdpieylleqiqnlhrvtlaeg
    ttarysakrqnrisddliiavimatylcddihairfrvs
    

    Sequence, based on observed residues (ATOM records):
    >3n4pC (C:)
    litdqsreefdilrystlntnaydyfgktlyvyldpaasgtgvaavgayrhqfliygleh
    fflrdlsessevaiaecaahmiisvlslhpyldelriavegntnqaaavriaclirqsvq
    sstlirvlfyhtpdqnhieqpfylmgrdkalaveqfisrfnsgyikasqelvsytiklsh
    dpieylleqiqnlsddliiavimatylcddihairfrv
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >3n4pD (D:)
    mghhhhhhdydipttenlyfqgggtnkisqntvlitdqsreefdilrystlntnaydyfg
    ktlyvyldpafttnrkasgtgvaavgayrhqfliyglehfflrdlsessevaiaecaahm
    iisvlslhpyldelriavegntnqaaavriaclirqsvqsstlirvlfyhtpdqnhieqp
    fylmgrdkalaveqfisrfnsgyikasqelvsytiklshdpieylleqiqnlhrvtlaeg
    ttarysakrqnrisddliiavimatylcddihairfrvs
    

    Sequence, based on observed residues (ATOM records):
    >3n4pD (D:)
    litdqsreefdilrystlntnaydyfgktlyvyldpatgvaavgayrhqfliyglehffe
    ssevaiaecaahmiisvlslhpyldelriavegntnqaaavriaclirqsvqsstlirvl
    fyhtpdqnhieqpfylmgrdkalaveqfisrfnsgyikasqelvsytiklshdpieylle
    qiqnlhrddliiavimatylcddihairfrvs