PDB entry 3mlv
View 3mlv on RCSB PDB site
Description: Crystal structure of anti-HIV-1 V3 Fab 2557 in complex with an NOF V3 peptide
Class: immune system
Keywords: human monoclonal antibody, Fab, HIV-1, gp120, third variable loop, antibody-antigen interaction, IMMUNE SYSTEM
Deposited on
2010-04-18, released
2010-07-14
The last revision prior to the SCOPe 2.08 freeze date was dated
2019-07-17, with a file datestamp of
2019-07-12.
Experiment type: XRAY
Resolution: 2.48 Å
R-factor: N/A
AEROSPACI score: 0.2
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'H':
Compound: Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3mlvh_ - Chain 'L':
Compound: Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab light chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3mlvl1, d3mlvl2 - Chain 'M':
Compound: Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab light chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3mlvm1, d3mlvm2 - Chain 'N':
Compound: Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d3mlvn_ - Chain 'P':
Compound: HIV-1 gp120 third variable region (V3) crown
Species: Human immunodeficiency virus 1 [TaxId:11676]
Database cross-references and differences (RAF-indexed):
- Chain 'Q':
Compound: HIV-1 gp120 third variable region (V3) crown
Species: Human immunodeficiency virus 1 [TaxId:11676]
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'H':
Sequence, based on SEQRES records: (download)
>3mlvH (H:)
evqlvesggevkqpgqslkisckssgynfldswigwvrqipgkglewigiiypddsdahy
spsfegqvtmsvdksistaylqwttlqasdtgkyfctrlylfegaqssnafdlwgqgtmi
lvssgttkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpav
lqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepks
Sequence, based on observed residues (ATOM records): (download)
>3mlvH (H:)
evqlvesggevkqpgqslkisckssgynfldswigwvrqipgkglewigiiypddsdahy
spsfegqvtmsvdksistaylqwttlqasdtgkyfctrlylfegaqssnafdlwgqgtmi
lvssgttkgpsvfplapssgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssg
lyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepks
- Chain 'L':
Sequence, based on SEQRES records: (download)
>3mlvL (L:)
sylltqppsvsvspgqtasiscsgdklddkyvswyyqrpgqspvllmyqdfkrpsgiper
lsgsksgktatltisgtqsldegdyycqawdastgvsgggtkltvlfgegtrltvlaqpk
aapsvtlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnn
kyaassylsltpeqwkshksyscqvthegstvektvapt
Sequence, based on observed residues (ATOM records): (download)
>3mlvL (L:)
ylltqppsvsvspgqtasiscsgdklddkyvswyyqrpgqspvllmyqdfkrpsgiperl
sgsksgktatltisgtqsldegdyycqawdastgvsgggtkltvlfgegtrltvlaqpka
apsvtlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnk
yaassylsltpeqwkshksyscqvthegstvektvapt
- Chain 'M':
Sequence; same for both SEQRES and ATOM records: (download)
>3mlvM (M:)
sylltqppsvsvspgqtasiscsgdklddkyvswyyqrpgqspvllmyqdfkrpsgiper
lsgsksgktatltisgtqsldegdyycqawdastgvsgggtkltvlfgegtrltvlaqpk
aapsvtlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnn
kyaassylsltpeqwkshksyscqvthegstvektvapt
- Chain 'N':
Sequence, based on SEQRES records: (download)
>3mlvN (N:)
evqlvesggevkqpgqslkisckssgynfldswigwvrqipgkglewigiiypddsdahy
spsfegqvtmsvdksistaylqwttlqasdtgkyfctrlylfegaqssnafdlwgqgtmi
lvssgttkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpav
lqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepks
Sequence, based on observed residues (ATOM records): (download)
>3mlvN (N:)
evqlvesggevkqpgqslkisckssgynfldswigwvrqipgkglewigiiypddsdahy
spsfegqvtmsvdksistaylqwttlqasdtgkyfctrlylfegaqssnafdlwgqgtmi
lvssgttkgpsvfplapssgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssg
lyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepks
- Chain 'P':
No sequence available.
- Chain 'Q':
No sequence available.