PDB entry 3mlt
View 3mlt on RCSB PDB site
Description: Crystal structure of anti-HIV-1 V3 Fab 2557 in complex with a UG1033 V3 peptide
Class: immune system
Keywords: human monoclonal antibody, Fab, HIV-1, gp120, third variable loop, antibody-antigen interaction, IMMUNE SYSTEM
Deposited on
2010-04-18, released
2010-07-14
The last revision prior to the SCOPe 2.03 freeze date was dated
2010-08-18, with a file datestamp of
2010-08-13.
Experiment type: XRAY
Resolution: 2.49 Å
R-factor: 0.206
AEROSPACI score: 0.31
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab light chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3mlta1, d3mlta2 - Chain 'B':
Compound: Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: HIV-1 gp120 third variable region (V3) crown
Species: Human immunodeficiency virus 1 [TaxId:11676]
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab light chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3mltd1, d3mltd2 - Chain 'E':
Compound: Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'G':
Compound: Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab light chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3mltg1, d3mltg2 - Chain 'H':
Compound: Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'I':
Compound: Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'L':
Compound: Human monoclonal anti-HIV-1 gp120 V3 antibody 2557 Fab light chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3mltl1, d3mltl2 - Chain 'P':
Compound: HIV-1 gp120 third variable region (V3) crown
Species: Human immunodeficiency virus 1 [TaxId:11676]
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3mltA (A:)
sydltqppsvsvspgqtasiscsgdklddkyvswyyqrpgqspvllmyqdfkrpsgiper
lsgsksgktatltisgtqsldegdyycqawdastgvsgggtkltvlfgdgtrltvlgqpk
aapsvtlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnn
kyaassylsltpeqwkshksyscqvthegstvektvapt
Sequence, based on observed residues (ATOM records): (download)
>3mltA (A:)
sydltqppsvsvspgqtasiscsgdklddkyvswyyqrpgqspvllmyqdfkrpsgiper
lsgsksgktatltisgtqsldegdyycqawdastggtkltvlfgdgtrltvlgqpkaaps
vtlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaa
ssylsltpeqwkshksyscqvthegstvektvapt
- Chain 'B':
No sequence available.
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3mltD (D:)
sydltqppsvsvspgqtasiscsgdklddkyvswyyqrpgqspvllmyqdfkrpsgiper
lsgsksgktatltisgtqsldegdyycqawdastgvsgggtkltvlfgdgtrltvlgqpk
aapsvtlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnn
kyaassylsltpeqwkshksyscqvthegstvektvapt
Sequence, based on observed residues (ATOM records): (download)
>3mltD (D:)
sydltqppsvsvspgqtasiscsgdklddkyvswyyqrpgqspvllmyqdfkrpsgiper
lsgsksgktatltisgtqsldegdyycqawdasgtkltvlfgdgtrltvlgqpkaapsvt
lfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaass
ylsltpeqwkshksyscqvthegstvektvapt
- Chain 'E':
No sequence available.
- Chain 'G':
Sequence, based on SEQRES records: (download)
>3mltG (G:)
sydltqppsvsvspgqtasiscsgdklddkyvswyyqrpgqspvllmyqdfkrpsgiper
lsgsksgktatltisgtqsldegdyycqawdastgvsgggtkltvlfgdgtrltvlgqpk
aapsvtlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnn
kyaassylsltpeqwkshksyscqvthegstvektvapt
Sequence, based on observed residues (ATOM records): (download)
>3mltG (G:)
sydltqppsvsvspgqtasiscsgdklddkyvswyyqrpgqspvllmyqdfkrpsgiper
lsgsksgktatltisgtqsldegdyycqawdasgtkltvlfgdgtrltvlgqpkaapsvt
lfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaass
ylsltpeqwkshksyscqvthegstvektvapt
- Chain 'H':
No sequence available.
- Chain 'I':
No sequence available.
- Chain 'L':
Sequence, based on SEQRES records: (download)
>3mltL (L:)
sydltqppsvsvspgqtasiscsgdklddkyvswyyqrpgqspvllmyqdfkrpsgiper
lsgsksgktatltisgtqsldegdyycqawdastgvsgggtkltvlfgdgtrltvlgqpk
aapsvtlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnn
kyaassylsltpeqwkshksyscqvthegstvektvapt
Sequence, based on observed residues (ATOM records): (download)
>3mltL (L:)
sydltqppsvsvspgqtasiscsgdklddkyvswyyqrpgqspvllmyqdfkrpsgiper
lsgsksgktatltisgtqsldegdyycqawdastgggtkltvlfgdgtrltvlgqpkaap
svtlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkya
assylsltpeqwkshksyscqvthegstvektvapt
- Chain 'P':
No sequence available.