PDB entry 3ml1

View 3ml1 on RCSB PDB site
Description: Crystal Structure of the Periplasmic Nitrate Reductase from Cupriavidus necator
Class: oxidoreductase
Keywords: Heterodimer, Oxidoreductase
Deposited on 2010-04-16, released 2011-04-06
The last revision prior to the SCOPe 2.06 freeze date was dated 2011-12-07, with a file datestamp of 2011-12-02.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: 0.159
AEROSPACI score: 0.61 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: periplasmic nitrate reductase
    Species: Ralstonia eutropha [TaxId:381666]
    Gene: napAB
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3ml1a1, d3ml1a2
  • Chain 'B':
    Compound: diheme cytochrome c napb
    Species: Ralstonia eutropha [TaxId:381666]
    Gene: napB
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SF4, MOS, MGD, HEC, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3ml1A (A:)
anfvtdsevtklkwskapcrfcgtgcgvtvavkdnkvvatqgdpqaevnkglncvkgyfl
skimygqdrltrplmrmkngkydkngdfapvtwdqafdemerqfkrvlkekgptavgmfg
sgqwtvwegyaaaklykagfrsnnidpnarhcmasaaagfmrtfgmdepmgcyddfeaad
afvlwgsnmaemhpilwtrvtdrrlshpktrvvvlstfthrcfdladigiifkpqtdlam
lnyianyiirnnkvnkdfvnkhtvfkegvtdigyglrpdhplqkaaknasdpgaakvitf
defakfvskydadyvsklsavpkakldqlaelyadpnikvmslwtmgfnqhtrgtwannm
vynlhlltgkiatpgnspfsltgqpsacgtarevgtfshrlpadmvvtnpkhreeaeriw
klppgtipdkpgydavlqnrmlkdgklnaywvqvnnnmqaaanlmeeglpgyrnpanfiv
vsdayptvtalaadlvlpsamwvekegaygnaerrtqfwhqlvdapgearsdlwqlvefa
krfkveevwppeliakkpeykgktlydvlyrngqvdkfplkdvnaeyhnaeakafgfylq
kglfeeyatfgrghghdlapfdayhearglrwpvvngketrwryregsdpyvkagtgfqf
ygnpdgkavifalpyeppaespdkeypywlvtgrvlehwhsgsmtrrvpelyrsfpnavv
fmhpedakalglrrgvevevvsrrgrmrsrietrgrdapprglvfvpwfdasqlinkvtl
datcpislqtdfkkcavkivkv

    Sequence, based on observed residues (ATOM records): (download) 
    >3ml1A (A:)
vtdsevtklkwskapcrfcgtgcgvtvavkdnkvvatqgdpqaevnkglncvkgyflski
mygqdrltrplmrmkngkydkngdfapvtwdqafdemerqfkrvlkekgptavgmfgsgq
wtvwegyaaaklykagfrsnnidpnarhcmasaaagfmrtfgmdepmgcyddfeaadafv
lwgsnmaemhpilwtrvtdrrlshpktrvvvlstfthrcfdladigiifkpqtdlamlny
ianyiirnnkvnkdfvnkhtvfkegvtdigyglrpdhplqkaaknasdpgaakvitfdef
akfvskydadyvsklsavpkakldqlaelyadpnikvmslwtmgfnqhtrgtwannmvyn
lhlltgkiatpgnspfsltgqpsacgtarevgtfshrlpadmvvtnpkhreeaeriwklp
pgtipdkpgydavlqnrmlkdgklnaywvqvnnnmqaaanlmeeglpgyrnpanfivvsd
ayptvtalaadlvlpsamwvekegaygnaerrtqfwhqlvdapgearsdlwqlvefakrf
kveevwppeliakkpeykgktlydvlyrngqvdkfplkdvnaeyhnaeakafgfylqkgl
feeyatfgrghghdlapfdayhearglrwpvvngketrwryregsdpyvkagtgfqfygn
pdgkavifalpyeppaespdkeypywlvtgrvlehwhsgsmtrrvpelyrsfpnavvfmh
pedakalglrrgvevevvsrrgrmrsrietrgrdapprglvfvpwfdasqlinkvtldat
cpislqtdfkkcavkivkv

  • Chain 'B':
    No sequence available.