PDB entry 3mgt

View 3mgt on RCSB PDB site
Description: Crystal structure of a H5-specific CTL epitope variant derived from H5N1 influenza virus in complex with HLA-A*0201
Class: Immune System
Keywords: beta strands-alpha helix, Ig-like domain, Immune System
Deposited on 2010-04-07, released 2010-05-19
The last revision prior to the SCOPe 2.06 freeze date was dated 2010-05-26, with a file datestamp of 2010-05-21.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.194
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: HLA class I histocompatibility antigen, A-2 alpha chain
  Species: Homo sapiens [TaxId:9606]
  Gene: HLA-A*0201
  Database cross-references and differences (RAF-indexed):
  • Uniprot P01892 (0-274)
• Chain 'B':
  Compound: Beta-2-microglobulin
  Species: Homo sapiens [TaxId:9606]
  Gene: beta2 microglobin
  Database cross-references and differences (RAF-indexed):
  • Uniprot P61769 (1-99)
    • initiating methionine (0)
  Domains in SCOPe 2.06: d3mgtb1, d3mgtb2
• Chain 'C':
  Compound: 10-meric peptide from Hemagglutinin
  Species: Influenza A virus, synthetic [TaxId:370810]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q1WDM0 (0-9)
• Chain 'D':
  Compound: HLA class I histocompatibility antigen, A-2 alpha chain
  Species: Homo sapiens [TaxId:9606]
  Gene: HLA-A*0201
  Database cross-references and differences (RAF-indexed):
  • Uniprot P01892 (0-274)
• Chain 'E':
  Compound: Beta-2-microglobulin
  Species: Homo sapiens [TaxId:9606]
  Gene: beta2 microglobin
  Database cross-references and differences (RAF-indexed):
  • Uniprot P61769 (1-99)
    • initiating methionine (0)
  Domains in SCOPe 2.06: d3mgte1, d3mgte2
• Chain 'F':
  Compound: 10-meric peptide from Hemagglutinin
  Species: Influenza A virus, synthetic [TaxId:370810]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q1WDM0 (0-9)
• Chain 'G':
  Compound: HLA class I histocompatibility antigen, A-2 alpha chain
  Species: Homo sapiens [TaxId:9606]
  Gene: HLA-A*0201
  Database cross-references and differences (RAF-indexed):
  • Uniprot P01892 (0-274)
• Chain 'H':
  Compound: Beta-2-microglobulin
  Species: Homo sapiens [TaxId:9606]
  Gene: beta2 microglobin
  Database cross-references and differences (RAF-indexed):
  • Uniprot P61769 (1-99)
    • initiating methionine (0)
  Domains in SCOPe 2.06: d3mgth1, d3mgth2
• Chain 'I':
  Compound: 10-meric peptide from Hemagglutinin
  Species: Influenza A virus, synthetic [TaxId:370810]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q1WDM0 (0-9)
• Chain 'J':
  Compound: HLA class I histocompatibility antigen, A-2 alpha chain
  Species: Homo sapiens [TaxId:9606]
  Gene: HLA-A*0201
  Database cross-references and differences (RAF-indexed):
  • Uniprot P01892 (0-274)
• Chain 'K':
  Compound: Beta-2-microglobulin
  Species: Homo sapiens [TaxId:9606]
  Gene: beta2 microglobin
  Database cross-references and differences (RAF-indexed):
  • Uniprot P61769 (1-99)
    • initiating methionine (0)
  Domains in SCOPe 2.06: d3mgtk1, d3mgtk2
• Chain 'L':
  Compound: 10-meric peptide from Hemagglutinin
  Species: Influenza A virus, synthetic [TaxId:370810]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q1WDM0 (0-9)
• Heterogens: HOH

PDB Chain Sequences:

• Chain 'A':
  No sequence available.
  
  
• Chain 'B':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3mgtB (B:)
  miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
  wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
  

  
  
• Chain 'C':
  No sequence available.
  
  
• Chain 'D':
  No sequence available.
  
  
• Chain 'E':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3mgtE (E:)
  miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
  wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
  

  
  
• Chain 'F':
  No sequence available.
  
  
• Chain 'G':
  No sequence available.
  
  
• Chain 'H':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3mgtH (H:)
  miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
  wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
  

  
  
• Chain 'I':
  No sequence available.
  
  
• Chain 'J':
  No sequence available.
  
  
• Chain 'K':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >3mgtK (K:)
  miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
  wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm
  

  
  
• Chain 'L':
  No sequence available.