PDB entry 3mbi

View 3mbi on RCSB PDB site
Description: Crystal structure of the phosphoribosylpyrophosphate (PRPP) synthetase from Thermoplasma volcanium in complex with ADP-Mg2+ and ribose 5-phosphate
Class: transferase
Keywords: Phosphoribosyl transferase, ATP analog binding, Ribose 5-phosphate binding, TRANSFERASE
Deposited on 2010-03-25, released 2011-04-20
The last revision prior to the SCOPe 2.06 freeze date was dated 2012-04-25, with a file datestamp of 2012-04-20.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.178
AEROSPACI score: 0.53 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ribose-phosphate pyrophosphokinase
    Species: Thermoplasma volcanium [TaxId:50339]
    Gene: prs, TV0197, TVG0201915, TVN0197
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q97CA5 (2-286)
      • expression tag (0-1)
    Domains in SCOPe 2.06: d3mbia1, d3mbia2, d3mbia3
  • Chain 'B':
    Compound: Ribose-phosphate pyrophosphokinase
    Species: Thermoplasma volcanium [TaxId:50339]
    Gene: prs, TV0197, TVG0201915, TVN0197
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q97CA5 (2-286)
      • expression tag (0-1)
    Domains in SCOPe 2.06: d3mbib1, d3mbib2, d3mbib3
  • Chain 'C':
    Compound: Ribose-phosphate pyrophosphokinase
    Species: Thermoplasma volcanium [TaxId:50339]
    Gene: prs, TV0197, TVG0201915, TVN0197
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3mbic1, d3mbic2
  • Chain 'D':
    Compound: Ribose-phosphate pyrophosphokinase
    Species: Thermoplasma volcanium [TaxId:50339]
    Gene: prs, TV0197, TVG0201915, TVN0197
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3mbid1, d3mbid2
  • Heterogens: PO4, MG, ADP, HSX, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3mbiA (A:)
sgmkiialrsslklaariaeelktepvmpderrfpdgelylrydedltghnifiignths
daevmemiltlsaiqdyrtksvniiapyygyarqhqrykngepissqilteiyssysnsi
atvdihdektlsyskvkfsdlhandaivryyknvdvdyvvspddgglarvadisaklgkk
hffiekkriddrtvemkvpnvdvngkkllivddiistggtiakssgllrekgaskiyvsa
vhglfvngsenkilqnadeihvtdtveskfsdisvyqevcnyirdid

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3mbiB (B:)
sgmkiialrsslklaariaeelktepvmpderrfpdgelylrydedltghnifiignths
daevmemiltlsaiqdyrtksvniiapyygyarqhqrykngepissqilteiyssysnsi
atvdihdektlsyskvkfsdlhandaivryyknvdvdyvvspddgglarvadisaklgkk
hffiekkriddrtvemkvpnvdvngkkllivddiistggtiakssgllrekgaskiyvsa
vhglfvngsenkilqnadeihvtdtveskfsdisvyqevcnyirdid

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3mbiC (C:)
sgmkiialrsslklaariaeelktepvmpderrfpdgelylrydedltghnifiignths
daevmemiltlsaiqdyrtksvniiapyygyarqhqrykngepissqilteiyssysnsi
atvdihdektlsyskvkfsdlhandaivryyknvdvdyvvspddgglarvadisaklgkk
hffiekkriddrtvemkvpnvdvngkkllivddiistggtiakssgllrekgaskiyvsa
vhglfvngsenkilqnadeihvtdtveskfsdisvyqevcnyirdid

    Sequence, based on observed residues (ATOM records): (download) 
    >3mbiC (C:)
mkiialrsslklaariaeelktepvmpderrfpdgelylrydedltghnifiignthsda
evmemiltlsaiqdyrtksvniiapyygyarqhqrykngepissqilteiyssysnsiat
vdihdektlsyskvkfsdlhandaivryyknvdvdyvvspddgglarvadisaklgkkhf
fiekkriddrtvemkvpnvdvngkkllivddiistggtiakssgllrekgaskiyvsavh
glfvngsenkilqnadeihvtdtveskfsdisvyqevcnyirdid

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3mbiD (D:)
sgmkiialrsslklaariaeelktepvmpderrfpdgelylrydedltghnifiignths
daevmemiltlsaiqdyrtksvniiapyygyarqhqrykngepissqilteiyssysnsi
atvdihdektlsyskvkfsdlhandaivryyknvdvdyvvspddgglarvadisaklgkk
hffiekkriddrtvemkvpnvdvngkkllivddiistggtiakssgllrekgaskiyvsa
vhglfvngsenkilqnadeihvtdtveskfsdisvyqevcnyirdid

    Sequence, based on observed residues (ATOM records): (download) 
    >3mbiD (D:)
mkiialrsslklaariaeelktepvmpderrfpdgelylrydedltghnifiignthsda
evmemiltlsaiqdyrtksvniiapyygyarqhqrykngepissqilteiyssysnsiat
vdihdektlsyskvkfsdlhandaivryyknvdvdyvvspddgglarvadisaklgkkhf
fiekkriddrtvemkvpnvdvngkkllivddiistggtiakssgllrekgaskiyvsavh
glfvngsenkilqnadeihvtdtveskfsdisvyqevcnyirdid