PDB entry 3ma7
View 3ma7 on RCSB PDB site
Description: Crystal structure of Cardiolipin bound to mouse CD1D
Class: immune system
Keywords: GAMMA DELTA T CELLS, GLYCOLIPID PRESENTATION, MHC, CD1, CELL MEMBRANE, ENDOSOME, GLYCOPROTEIN, IMMUNE RESPONSE, IMMUNOGLOBULIN DOMAIN, INNATE IMMUNITY, LYSOSOME, MEMBRANE, TRANSMEMBRANE, MHC I, SECRETED, IMMUNE SYSTEM, Disulfide bond, Immunity
Deposited on
2010-03-23, released
2011-03-16
The last revision prior to the SCOPe 2.03 freeze date was dated
2011-06-22, with a file datestamp of
2011-06-17.
Experiment type: XRAY
Resolution: 2.29 Å
R-factor: 0.234
AEROSPACI score: 0.31
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: T-cell surface glycoprotein CD1d1
Species: Mus musculus [TaxId:10090]
Gene: Cd1.1, CD1d, Cd1d1
Database cross-references and differences (RAF-indexed):
- Uniprot P11609 (Start-278)
- engineered mutation (200)
Domains in SCOPe 2.03: d3ma7a1, d3ma7a2 - Chain 'B':
Compound: beta-2 microglobulin
Species: Mus musculus [TaxId:10090]
Gene: B2m, beta-2-microglobulin, mCG_11606, RP23-34E24.5-001
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3ma7b_ - Chain 'C':
Compound: T-cell surface glycoprotein CD1d1
Species: Mus musculus [TaxId:10090]
Gene: Cd1.1, CD1d, Cd1d1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3ma7c1, d3ma7c2 - Chain 'D':
Compound: beta-2 microglobulin
Species: Mus musculus [TaxId:10090]
Gene: B2m, beta-2-microglobulin, mCG_11606, RP23-34E24.5-001
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3ma7d_ - Heterogens: CD4, PLM, NAG, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3ma7A (A:)
seaqqknytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsn
qqweklqhmfqvyrvsftrdiqelvkmmspkedypieiqlsagcemypgnasesflhvaf
qgkyvvrfwgtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagk
sdlekqekpvawlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpn
adetwylqatldveageeaglacrvkhsslggqdiilywhhhhhh
Sequence, based on observed residues (ATOM records): (download)
>3ma7A (A:)
nytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsnqqwekl
qhmfqvyrvsftrdiqelvkmmspkedypieiqlsagcemypgnasesflhvafqgkyvv
rfwgtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagksdlekq
ekpvawlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnadetwy
lqatldveageeaglacrvkhsslggqdiilyw
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3ma7B (B:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhasmaepktvywdrdm
Sequence, based on observed residues (ATOM records): (download)
>3ma7B (B:)
qktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdws
fyilahteftptetdtyacrvkhasmaepktvywdrdm
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3ma7C (C:)
seaqqknytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsn
qqweklqhmfqvyrvsftrdiqelvkmmspkedypieiqlsagcemypgnasesflhvaf
qgkyvvrfwgtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagk
sdlekqekpvawlssvpssahghrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpn
adetwylqatldveageeaglacrvkhsslggqdiilywhhhhhh
Sequence, based on observed residues (ATOM records): (download)
>3ma7C (C:)
nytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsnqqwekl
qhmfqvyrvsftrdiqelvkmmdypieiqlsagcemypgsesflhvafqgkyvvrfwgts
wqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagksdlekqekpvaw
lssvpssahrqlvchvsgfypkpvwvmwmrgdqeqqgthrgdflpnadetwylqatldve
ageeaglacrvkhsslggqdiilyw
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3ma7D (D:)
iqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdw
sfyilahteftptetdtyacrvkhasmaepktvywdrdm
Sequence, based on observed residues (ATOM records): (download)
>3ma7D (D:)
qktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskdws
fyilahteftptetdtyacrvkhasmaepktvywdrdm