PDB entry 3m6s

View 3m6s on RCSB PDB site
Description: Crystal structure of H1N1pdm Hemagglutinin
Class: viral protein
Keywords: Influenza virus, Hemagglutinin, pandemic, Envelope protein, Fusion protein, Host cell membrane, Host membrane, Membrane, Transmembrane, Virion, VIRAL PROTEIN
Deposited on 2010-03-16, released 2010-03-31
The last revision prior to the SCOPe 2.01 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.231
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:650110]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot C5MV42 (4-End)
      • expression tag (1-3)
    Domains in SCOPe 2.01: d3m6sa_
  • Chain 'B':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:650110]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:650110]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot C5MV42 (4-End)
      • expression tag (3)
    Domains in SCOPe 2.01: d3m6sc_
  • Chain 'D':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:650110]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:650110]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot C5MV42 (4-End)
      • expression tag (3)
    Domains in SCOPe 2.01: d3m6se_
  • Chain 'F':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:650110]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:650110]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3m6sg_
  • Chain 'H':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:650110]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:650110]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
    • Uniprot C5MV42 (4-End)
      • expression tag (3)
    Domains in SCOPe 2.01: d3m6si_
  • Chain 'J':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:650110]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:650110]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3m6sk_
  • Chain 'L':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:650110]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NAG

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3m6sA (A:)
adpgdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcn
iagwilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfei
fpktsswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvl
wgihhpstsadqqslyqnadayvfvgtskyskkfkpeiairpkvrdqegrmnyywtlvep
gdkitfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnih
pitigkcpkyvkstklrlatglrnvpsiqsr

    Sequence, based on observed residues (ATOM records): (download) 
    >3m6sA (A:)
dpgdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcni
agwilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfeif
pktsswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvlw
gihhpstsadqqslyqnadayvfvgtskyskkfkpeiairpkvrdqegrmnyywtlvepg
dkitfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihp
itigkcpkyvkstklrlatglrnvp

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3m6sC (C:)
adpgdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcn
iagwilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfei
fpktsswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvl
wgihhpstsadqqslyqnadayvfvgtskyskkfkpeiairpkvrdqegrmnyywtlvep
gdkitfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnih
pitigkcpkyvkstklrlatglrnvpsiqsr

    Sequence, based on observed residues (ATOM records): (download) 
    >3m6sC (C:)
gdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcniag
wilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfeifpk
tsswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvlwgi
hhpstsadqqslyqnadayvfvgtskyskkfkpeiairpkvrdqegrmnyywtlvepgdk
itfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihpit
igkcpkyvkstklrlatglrnvp

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3m6sE (E:)
adpgdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcn
iagwilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfei
fpktsswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvl
wgihhpstsadqqslyqnadayvfvgtskyskkfkpeiairpkvrdqegrmnyywtlvep
gdkitfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnih
pitigkcpkyvkstklrlatglrnvpsiqsr

    Sequence, based on observed residues (ATOM records): (download) 
    >3m6sE (E:)
gdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcniag
wilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfeifpk
tsswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvlwgi
hhpstsadqqslyqnadayvfvgtskyskkfkpeiairpkvrdqegrmnyywtlvepgdk
itfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihpit
igkcpkyvkstklrlatglrnvp

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3m6sG (G:)
adpgdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcn
iagwilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfei
fpktsswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvl
wgihhpstsadqqslyqnadayvfvgtskyskkfkpeiairpkvrdqegrmnyywtlvep
gdkitfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnih
pitigkcpkyvkstklrlatglrnvpsiqsr

    Sequence, based on observed residues (ATOM records): (download) 
    >3m6sG (G:)
dtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcniagw
ilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfeifpkt
sswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvlwgih
hpstsadqqslyqnadayvfvgtskyskkfkpeiairpkvrdqegrmnyywtlvepgdki
tfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihpiti
gkcpkyvkstklrlatglrnvp

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >3m6sI (I:)
adpgdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcn
iagwilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfei
fpktsswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvl
wgihhpstsadqqslyqnadayvfvgtskyskkfkpeiairpkvrdqegrmnyywtlvep
gdkitfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnih
pitigkcpkyvkstklrlatglrnvpsiqsr

    Sequence, based on observed residues (ATOM records): (download) 
    >3m6sI (I:)
gdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcniag
wilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfeifpk
tsswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvlwgi
hhpstsadqqslyqnadayvfvgtskyskkfkpeiairpkvrdqegrmnyywtlvepgdk
itfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihpit
igkcpkyvkstklrlatglrnv

  • Chain 'J':
    No sequence available.

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >3m6sK (K:)
adpgdtlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcn
iagwilgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfei
fpktsswpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvl
wgihhpstsadqqslyqnadayvfvgtskyskkfkpeiairpkvrdqegrmnyywtlvep
gdkitfeatgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnih
pitigkcpkyvkstklrlatglrnvpsiqsr

    Sequence, based on observed residues (ATOM records): (download) 
    >3m6sK (K:)
tlcigyhannstdtvdtvleknvtvthsvnlledkhngklcklrgvaplhlgkcniagwi
lgnpeceslstasswsyivetsssdngtcypgdfidyeelreqlssvssferfeifpkts
swpnhdsnkgvtaacphagaksfyknliwlvkkgnsypklsksyindkgkevlvlwgihh
pstsadqqslyqnadayvfvgtskyskkfkpeiairpkvrdqegrmnyywtlvepgdkit
featgnlvvpryafamernagsgiiisdtpvhdcnttcqtpkgaintslpfqnihpitig
kcpkyvkstklrlatglrnvp

  • Chain 'L':
    No sequence available.