PDB entry 3m5v

View 3m5v on RCSB PDB site
Description: Crystal Structure of Dihydrodipicolinate Synthase from Campylobacter jejuni
Class: lyase
Keywords: TIM barrel, CSGID, Amino-acid biosynthesis, Diaminopimelate biosynthesis, Lyase, Lysine biosynthesis, Schiff base, Structural Genomics, Center for Structural Genomics of Infectious Diseases
Deposited on 2010-03-13, released 2010-04-28
The last revision prior to the SCOPe 2.03 freeze date was dated 2012-02-29, with a file datestamp of 2012-02-24.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.148
AEROSPACI score: 0.56 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Dihydrodipicolinate synthase
    Species: Campylobacter jejuni [TaxId:197]
    Gene: Cj0806, dapA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3m5va_
  • Chain 'B':
    Compound: Dihydrodipicolinate synthase
    Species: Campylobacter jejuni [TaxId:197]
    Gene: Cj0806, dapA
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9PPB4 (3-300)
      • expression tag (1-2)
    Domains in SCOPe 2.03: d3m5vb_
  • Chain 'C':
    Compound: Dihydrodipicolinate synthase
    Species: Campylobacter jejuni [TaxId:197]
    Gene: Cj0806, dapA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3m5vc_
  • Chain 'D':
    Compound: Dihydrodipicolinate synthase
    Species: Campylobacter jejuni [TaxId:197]
    Gene: Cj0806, dapA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d3m5vd_
  • Heterogens: SO4, CL, PEG, FMT, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3m5vA (A:)
snamdkniiigamtalitpfkngkvdeqsyarlikrqiengidavvpvgttgesatlthe
ehrtcieiavetckgtkvkvlagagsnatheavglakfakehgadgilsvapyynkptqq
glyehykaiaqsvdipvllynvpgrtgceistdtiiklfrdceniygvkeasgnidkcvd
llaheprmmlisgedainypilsnggkgvisvtsnllpdmisalthfaldenykeakkin
delyninkilfcesnpipiktamylaglieslefrlplcspskenfakieevmkkykikg
f

    Sequence, based on observed residues (ATOM records): (download) 
    >3m5vA (A:)
mdkniiigamtalitpfkngkvdeqsyarlikrqiengidavvpvgttgesatltheehr
tcieiavetckgtkvkvlagagsnatheavglakfakehgadgilsvapyynkptqqgly
ehykaiaqsvdipvllynvpgrtgceistdtiiklfrdceniygvkeasgnidkcvdlla
heprmmlisgedainypilsnggkgvisvtsnllpdmisalthfaldenykeakkindel
yninkilfcesnpipiktamylaglieslefrlplcspskenfakieevmkkykikgf

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3m5vB (B:)
snamdkniiigamtalitpfkngkvdeqsyarlikrqiengidavvpvgttgesatlthe
ehrtcieiavetckgtkvkvlagagsnatheavglakfakehgadgilsvapyynkptqq
glyehykaiaqsvdipvllynvpgrtgceistdtiiklfrdceniygvkeasgnidkcvd
llaheprmmlisgedainypilsnggkgvisvtsnllpdmisalthfaldenykeakkin
delyninkilfcesnpipiktamylaglieslefrlplcspskenfakieevmkkykikg
f

    Sequence, based on observed residues (ATOM records): (download) 
    >3m5vB (B:)
namdkniiigamtalitpfkngkvdeqsyarlikrqiengidavvpvgttgesatlthee
hrtcieiavetckgtkvkvlagagsnatheavglakfakehgadgilsvapyynkptqqg
lyehykaiaqsvdipvllynvpgrtgceistdtiiklfrdceniygvkeasgnidkcvdl
laheprmmlisgedainypilsnggkgvisvtsnllpdmisalthfaldenykeakkind
elyninkilfcesnpipiktamylaglieslefrlplcspskenfakieevmkkykikgf

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3m5vC (C:)
snamdkniiigamtalitpfkngkvdeqsyarlikrqiengidavvpvgttgesatlthe
ehrtcieiavetckgtkvkvlagagsnatheavglakfakehgadgilsvapyynkptqq
glyehykaiaqsvdipvllynvpgrtgceistdtiiklfrdceniygvkeasgnidkcvd
llaheprmmlisgedainypilsnggkgvisvtsnllpdmisalthfaldenykeakkin
delyninkilfcesnpipiktamylaglieslefrlplcspskenfakieevmkkykikg
f

    Sequence, based on observed residues (ATOM records): (download) 
    >3m5vC (C:)
kniiigamtalitpfkngkvdeqsyarlikrqiengidavvpvgttgesatltheehrtc
ieiavetckgtkvkvlagagsnatheavglakfakehgadgilsvapyynkptqqglyeh
ykaiaqsvdipvllynvpgrtgceistdtiiklfrdceniygvkeasgnidkcvdllahe
prmmlisgedainypilsnggkgvisvtsnllpdmisalthfaldenykeakkindelyn
inkilfcesnpipiktamylaglieslefrlplcspskenfakieevmkkykikgf

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3m5vD (D:)
snamdkniiigamtalitpfkngkvdeqsyarlikrqiengidavvpvgttgesatlthe
ehrtcieiavetckgtkvkvlagagsnatheavglakfakehgadgilsvapyynkptqq
glyehykaiaqsvdipvllynvpgrtgceistdtiiklfrdceniygvkeasgnidkcvd
llaheprmmlisgedainypilsnggkgvisvtsnllpdmisalthfaldenykeakkin
delyninkilfcesnpipiktamylaglieslefrlplcspskenfakieevmkkykikg
f

    Sequence, based on observed residues (ATOM records): (download) 
    >3m5vD (D:)
mdkniiigamtalitpfkngkvdeqsyarlikrqiengidavvpvgttgesatltheehr
tcieiavetckgtkvkvlagagsnatheavglakfakehgadgilsvapyynkptqqgly
ehykaiaqsvdipvllynvpgrtgceistdtiiklfrdceniygvkeasgnidkcvdlla
heprmmlisgedainypilsnggkgvisvtsnllpdmisalthfaldenykeakkindel
yninkilfcesnpipiktamylaglieslefrlplcspskenfakieevmkkykikgf