PDB entry 3m5g

View 3m5g on RCSB PDB site
Description: Crystal structure of a H7 influenza virus hemagglutinin
Class: viral protein
Keywords: influenza virus, hemagglutinin, Envelope protein, Fusion protein, Host cell membrane, Host membrane, Membrane, Transmembrane, Virion, VIRAL PROTEIN
Deposited on 2010-03-12, released 2010-09-22
The last revision prior to the SCOPe 2.05 freeze date was dated 2010-12-22, with a file datestamp of 2010-12-17.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: 0.219
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:490450]
    Database cross-references and differences (RAF-indexed):
    • Uniprot B7NY59 (3-End)
      • see remark 999 (210)
      • see remark 999 (243)
      • see remark 999 (295)
    Domains in SCOPe 2.05: d3m5ga_
  • Chain 'B':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:490450]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3m5gb_
  • Chain 'C':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:490450]
    Database cross-references and differences (RAF-indexed):
    • Uniprot B7NY59
      • see remark 999 (210)
      • see remark 999 (243)
      • see remark 999 (295)
    Domains in SCOPe 2.05: d3m5gc_
  • Chain 'D':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:490450]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3m5gd_
  • Chain 'E':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:490450]
    Database cross-references and differences (RAF-indexed):
    • Uniprot B7NY59 (3-End)
      • see remark 999 (210)
      • see remark 999 (243)
      • see remark 999 (295)
    Domains in SCOPe 2.05: d3m5ge_
  • Chain 'F':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:490450]
    Gene: HA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d3m5gf_
  • Heterogens: NAG, PEG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3m5gA (A:)
adpgdkiclghhavangtkvntltergievvnatetvettnikkictqgkrptdlgqcgl
lgtligppqcdqflefssdliierregtdicypgrftneeslrqilrrsggigkesmgft
ysgirtngatsactrsgssfyaemkwllsnsdnaafpqmtkayrnprnkpaliiwgvhhs
esvseqtklygsgnklitvrsskyqqsftpnpgarridfhwllldpndtvtftfngafia
pdrtsffrgeslgvqsdapldsscrgdcfhsggtivsslpfqninsrtvgkcpryvkqks
lllatgmrnvpekpkpr

    Sequence, based on observed residues (ATOM records): (download) 
    >3m5gA (A:)
gdkiclghhavangtkvntltergievvnatetvettnikkictqgkrptdlgqcgllgt
ligppqcdqflefssdliierregtdicypgrftneeslrqilrrsggigkesmgftysg
irtngatsactrsgssfyaemkwllsnsdnaafpqmtkayrnprnkpaliiwgvhhsesv
seqtklygsgnklitvrsskyqqsftpnpgarridfhwllldpndtvtftfngafiapdr
tsffrgeslgvqsdapldsscrgdcfhsggtivsslpfqninsrtvgkcpryvkqkslll
atgmrnvpek

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3m5gB (B:)
glfgaiagfiengweglingwygfrhqnaqgegtaadykstqsaidqitgklnrligktn
qqfelidnefneieqqignvinwtrdamteiwsynaellvamenqhtidladsemsklye
rvkkqlrenaeedgtgcfeifhkcddqcmesirnntydhtqyrteslqnriqidsgrlvp
rg

    Sequence, based on observed residues (ATOM records): (download) 
    >3m5gB (B:)
glfgaiagfiengweglingwygfrhqnaqgegtaadykstqsaidqitgklnrligktn
qqfelidnefneieqqignvinwtrdamteiwsynaellvamenqhtidladsemsklye
rvkkqlrenaeedgtgcfeifhkcddqcmesirnntydhtqyrteslqnriqid

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3m5gC (C:)
adpgdkiclghhavangtkvntltergievvnatetvettnikkictqgkrptdlgqcgl
lgtligppqcdqflefssdliierregtdicypgrftneeslrqilrrsggigkesmgft
ysgirtngatsactrsgssfyaemkwllsnsdnaafpqmtkayrnprnkpaliiwgvhhs
esvseqtklygsgnklitvrsskyqqsftpnpgarridfhwllldpndtvtftfngafia
pdrtsffrgeslgvqsdapldsscrgdcfhsggtivsslpfqninsrtvgkcpryvkqks
lllatgmrnvpekpkpr

    Sequence, based on observed residues (ATOM records): (download) 
    >3m5gC (C:)
dkiclghhavangtkvntltergievvnatetvettnikkictqgkrptdlgqcgllgtl
igppqcdqflefssdliierregtdicypgrftneeslrqilrrsggigkesmgftysgi
rtngatsactrsgssfyaemkwllsnsdnaafpqmtkayrnprnkpaliiwgvhhsesvs
eqtklygsgnklitvrsskyqqsftpnpgarridfhwllldpndtvtftfngafiapdrt
sffrgeslgvqsdapldsscrgdcfhsggtivsslpfqninsrtvgkcpryvkqksllla
tgmrnvpe

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3m5gD (D:)
glfgaiagfiengweglingwygfrhqnaqgegtaadykstqsaidqitgklnrligktn
qqfelidnefneieqqignvinwtrdamteiwsynaellvamenqhtidladsemsklye
rvkkqlrenaeedgtgcfeifhkcddqcmesirnntydhtqyrteslqnriqidsgrlvp
rg

    Sequence, based on observed residues (ATOM records): (download) 
    >3m5gD (D:)
glfgaiagfiengweglingwygfrhqnaqgegtaadykstqsaidqitgklnrligktn
qqfelidnefneieqqignvinwtrdamteiwsynaellvamenqhtidladsemsklye
rvkkqlrenaeedgtgcfeifhkcddqcmesirnntydhtqyrteslqnriqi

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3m5gE (E:)
adpgdkiclghhavangtkvntltergievvnatetvettnikkictqgkrptdlgqcgl
lgtligppqcdqflefssdliierregtdicypgrftneeslrqilrrsggigkesmgft
ysgirtngatsactrsgssfyaemkwllsnsdnaafpqmtkayrnprnkpaliiwgvhhs
esvseqtklygsgnklitvrsskyqqsftpnpgarridfhwllldpndtvtftfngafia
pdrtsffrgeslgvqsdapldsscrgdcfhsggtivsslpfqninsrtvgkcpryvkqks
lllatgmrnvpekpkpr

    Sequence, based on observed residues (ATOM records): (download) 
    >3m5gE (E:)
gdkiclghhavangtkvntltergievvnatetvettnikkictqgkrptdlgqcgllgt
ligppqcdqflefssdliierregtdicypgrftneeslrqilrrsggigkesmgftysg
irtngatsactrsgssfyaemkwllsnsdnaafpqmtkayrnprnkpaliiwgvhhsesv
seqtklygsgnklitvrsskyqqsftpnpgarridfhwllldpndtvtftfngafiapdr
tsffrgeslgvqsdapldsscrgdcfhsggtivsslpfqninsrtvgkcpryvkqkslll
atgmrnvpe

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >3m5gF (F:)
glfgaiagfiengweglingwygfrhqnaqgegtaadykstqsaidqitgklnrligktn
qqfelidnefneieqqignvinwtrdamteiwsynaellvamenqhtidladsemsklye
rvkkqlrenaeedgtgcfeifhkcddqcmesirnntydhtqyrteslqnriqidsgrlvp
rg

    Sequence, based on observed residues (ATOM records): (download) 
    >3m5gF (F:)
glfgaiagfiengweglingwygfrhqnaqgegtaadykstqsaidqitgklnrligktn
qqfelidnefneieqqignvinwtrdamteiwsynaellvamenqhtidladsemsklye
rvkkqlrenaeedgtgcfeifhkcddqcmesirnntydhtqyrteslqnriq