PDB entry 3lzf
View 3lzf on RCSB PDB site
Description: Crystal Structure of Fab 2D1 in Complex with the 1918 Influenza Virus Hemagglutinin
Class: viral protein/immune system
Keywords: hemagglutinin, Fab, neutralizing antibodies, antibody, pandemic flu, swine flu, Envelope protein, Fusion protein, Glycoprotein, antigen, Virion, VIRAL PROTEIN-IMMUNE SYSTEM complex
Deposited on
2010-03-01, released
2010-04-07
The last revision prior to the SCOPe 2.03 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.232
AEROSPACI score: 0.24
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Hemagglutinin, HA1 SUBUNIT
Species: Influenza A virus [TaxId:59375]
Gene: HA, hemagglutinin
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3lzfa_ - Chain 'B':
Compound: Hemagglutinin, HA2 SUBUNIT
Species: Influenza A virus [TaxId:59375]
Gene: HA, hemagglutinin
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: 2D1 Fab, Heavy Chain
Species: Homo sapiens [TaxId:9606]
Gene: Immunoglobulin, Gamma Chain
Database cross-references and differences (RAF-indexed):
- Chain 'L':
Compound: 2D1 Fab, Light Chain
Species: Homo sapiens [TaxId:9606]
Gene: Immunoglobulin, Lambda Chain
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3lzfl1, d3lzfl2 - Heterogens: NAG
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3lzfA (A:)
adpgdticigyhannstdtvdtvleknvtvthsvnlledshngklcklkgiaplqlgkcn
iagwllgnpecdllltasswsyivetsnsengtcypgdfidyeelreqlssvssfekfei
fpktsswpnhettkgvtaacsyagassfyrnllwltkkgssypklsksyvnnkgkevlvl
wgvhhpptgtdqqslyqnadayvsvgsskynrrftpeiaarpkvrdqagrmnyywtllep
gdtitfeatgnliapwyafalnrgsgsgiitsdapvhdcntkcqtphgainsslpfqnih
pvtigecpkyvrstklrmatglrnipsiqsr
Sequence, based on observed residues (ATOM records): (download)
>3lzfA (A:)
dticigyhannstdtvdtvleknvtvthsvnlledshngklcklkgiaplqlgkcniagw
llgnpecdllltasswsyivetsnsengtcypgdfidyeelreqlssvssfekfeifpkt
sswpnhettkgvtaacsyagassfyrnllwltkkgssypklsksyvnnkgkevlvlwgvh
hpptgtdqqslyqnadayvsvgsskynrrftpeiaarpkvrdqagrmnyywtllepgdti
tfeatgnliapwyafalnrgsgsgiitsdapvhdcntkcqtphgainsslpfqnihpvti
gecpkyvrstklrmatglrnips
- Chain 'B':
No sequence available.
- Chain 'H':
No sequence available.
- Chain 'L':
Sequence, based on SEQRES records: (download)
>3lzfL (L:)
qpvltqppsasgtpgqrvtiscsgsssnigsntvswyqqvpgtapklliygnnerpsgvp
drfsgsksatsaslaisglqsedeadyycaawddslngfwvfgggtkltvlgqpkaapsv
tlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaas
sylsltpeqwkshksyscqvthegstvektvaptecs
Sequence, based on observed residues (ATOM records): (download)
>3lzfL (L:)
pvltqppsasgtpgqrvtiscsgsssnigsntvswyqqvpgtapklliygnnerpsgvpd
rfsgsksatsaslaisglqsedeadyycaawddslngfwvfgggtkltvlgqpkaapsvt
lfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaass
ylsltpeqwkshksyscqvthegstvektvap