PDB entry 3loc

View 3loc on RCSB PDB site
Description: Crystal structure of putative transcriptional regulator ycdc
Class: transcription
Keywords: HELIX-TURN-HELIX, PUTATIVE TRANSCRIPTIONAL REGULATOR, DIMER, URACIL, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC, DNA-binding, Repressor, Transcription, Transcription regulation
Deposited on 2010-02-03, released 2010-03-16
The last revision prior to the SCOPe 2.01 freeze date was dated 2010-06-16, with a file datestamp of 2010-06-11.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.197
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: HTH-type transcriptional regulator rutR
    Species: Escherichia coli [TaxId:83333]
    Gene: b1013, JW0998, rutR, ycdC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3loca1, d3loca2
  • Chain 'B':
    Compound: HTH-type transcriptional regulator rutR
    Species: Escherichia coli [TaxId:83333]
    Gene: b1013, JW0998, rutR, ycdC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3locb1, d3locb2
  • Chain 'C':
    Compound: HTH-type transcriptional regulator rutR
    Species: Escherichia coli [TaxId:83333]
    Gene: b1013, JW0998, rutR, ycdC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3locc1, d3locc2
  • Chain 'D':
    Compound: HTH-type transcriptional regulator rutR
    Species: Escherichia coli [TaxId:83333]
    Gene: b1013, JW0998, rutR, ycdC
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.01: d3locd1, d3locd2
  • Heterogens: URA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3locA (A:)
mtqgavkttgkrsravsakkkailsaaldtfsqfgfhgtrleqiaelagvsktnllyyfp
skealyiavlrqildiwlaplkafredfaplaaikeyirlklevsrdypqasrlfcmeml
agapllmdeltgdlkalideksaliagwvksgklapidpqhlifmiwastqhyadfapqv
eavtgatlrdevffnqtvenvqriiiegirpr

    Sequence, based on observed residues (ATOM records): (download) 
    >3locA (A:)
rsravsakkkailsaaldtfsqfgfhgtrleqiaelagvsktnllyyfpskealyiavlr
qildiwlaplkafredfaplaaikeyirlklevsrdypqasrlfcmemlagapllmdelt
gdlkalideksaliagwvksgklapidpqhlifmiwastqhyadfapqveavtgatlrde
vffnqtvenvqriiiegirpr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3locB (B:)
mtqgavkttgkrsravsakkkailsaaldtfsqfgfhgtrleqiaelagvsktnllyyfp
skealyiavlrqildiwlaplkafredfaplaaikeyirlklevsrdypqasrlfcmeml
agapllmdeltgdlkalideksaliagwvksgklapidpqhlifmiwastqhyadfapqv
eavtgatlrdevffnqtvenvqriiiegirpr

    Sequence, based on observed residues (ATOM records): (download) 
    >3locB (B:)
rsravsakkkailsaaldtfsqfgfhgtrleqiaelagvsktnllyyfpskealyiavlr
qildiwlaplkafredfaplaaikeyirlklevsrdypqasrlfcmemlagapllmdelt
gdlkalideksaliagwvksgklapidpqhlifmiwastqhyadfapqveavtgatlrde
vffnqtvenvqriiiegirpr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3locC (C:)
mtqgavkttgkrsravsakkkailsaaldtfsqfgfhgtrleqiaelagvsktnllyyfp
skealyiavlrqildiwlaplkafredfaplaaikeyirlklevsrdypqasrlfcmeml
agapllmdeltgdlkalideksaliagwvksgklapidpqhlifmiwastqhyadfapqv
eavtgatlrdevffnqtvenvqriiiegirpr

    Sequence, based on observed residues (ATOM records): (download) 
    >3locC (C:)
sravsakkkailsaaldtfsqfgfhgtrleqiaelagvsktnllyyfpskealyiavlrq
ildiwlaplkafredfaplaaikeyirlklevsrdypqasrlfcmemlagapllmdeltg
dlkalideksaliagwvksgklapidpqhlifmiwastqhyadfapqveavtgatlrdev
ffnqtvenvqriiiegirpr

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3locD (D:)
mtqgavkttgkrsravsakkkailsaaldtfsqfgfhgtrleqiaelagvsktnllyyfp
skealyiavlrqildiwlaplkafredfaplaaikeyirlklevsrdypqasrlfcmeml
agapllmdeltgdlkalideksaliagwvksgklapidpqhlifmiwastqhyadfapqv
eavtgatlrdevffnqtvenvqriiiegirpr

    Sequence, based on observed residues (ATOM records): (download) 
    >3locD (D:)
rsravsakkkailsaaldtfsqfgfhgtrleqiaelagvsktnllyyfpskealyiavlr
qildiwlaplkafredfaplaaikeyirlklevsrdypqasrlfcmemlagapllmdelt
gdlkalideksaliagwvksgklapidpqhlifmiwastqhyadfapqveavtgatlrde
vffnqtvenvqriiiegirpr