PDB entry 3loc
View 3loc on RCSB PDB site
Description: Crystal structure of putative transcriptional regulator ycdc
Class: transcription
Keywords: HELIX-TURN-HELIX, PUTATIVE TRANSCRIPTIONAL REGULATOR, DIMER, URACIL, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC, DNA-binding, Repressor, Transcription, Transcription regulation
Deposited on
2010-02-03, released
2010-03-16
The last revision prior to the SCOPe 2.01 freeze date was dated
2010-06-16, with a file datestamp of
2010-06-11.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.197
AEROSPACI score: 0.32
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: HTH-type transcriptional regulator rutR
Species: Escherichia coli [TaxId:83333]
Gene: b1013, JW0998, rutR, ycdC
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d3loca1, d3loca2 - Chain 'B':
Compound: HTH-type transcriptional regulator rutR
Species: Escherichia coli [TaxId:83333]
Gene: b1013, JW0998, rutR, ycdC
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d3locb1, d3locb2 - Chain 'C':
Compound: HTH-type transcriptional regulator rutR
Species: Escherichia coli [TaxId:83333]
Gene: b1013, JW0998, rutR, ycdC
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d3locc1, d3locc2 - Chain 'D':
Compound: HTH-type transcriptional regulator rutR
Species: Escherichia coli [TaxId:83333]
Gene: b1013, JW0998, rutR, ycdC
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d3locd1, d3locd2 - Heterogens: URA, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3locA (A:)
mtqgavkttgkrsravsakkkailsaaldtfsqfgfhgtrleqiaelagvsktnllyyfp
skealyiavlrqildiwlaplkafredfaplaaikeyirlklevsrdypqasrlfcmeml
agapllmdeltgdlkalideksaliagwvksgklapidpqhlifmiwastqhyadfapqv
eavtgatlrdevffnqtvenvqriiiegirpr
Sequence, based on observed residues (ATOM records): (download)
>3locA (A:)
rsravsakkkailsaaldtfsqfgfhgtrleqiaelagvsktnllyyfpskealyiavlr
qildiwlaplkafredfaplaaikeyirlklevsrdypqasrlfcmemlagapllmdelt
gdlkalideksaliagwvksgklapidpqhlifmiwastqhyadfapqveavtgatlrde
vffnqtvenvqriiiegirpr
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3locB (B:)
mtqgavkttgkrsravsakkkailsaaldtfsqfgfhgtrleqiaelagvsktnllyyfp
skealyiavlrqildiwlaplkafredfaplaaikeyirlklevsrdypqasrlfcmeml
agapllmdeltgdlkalideksaliagwvksgklapidpqhlifmiwastqhyadfapqv
eavtgatlrdevffnqtvenvqriiiegirpr
Sequence, based on observed residues (ATOM records): (download)
>3locB (B:)
rsravsakkkailsaaldtfsqfgfhgtrleqiaelagvsktnllyyfpskealyiavlr
qildiwlaplkafredfaplaaikeyirlklevsrdypqasrlfcmemlagapllmdelt
gdlkalideksaliagwvksgklapidpqhlifmiwastqhyadfapqveavtgatlrde
vffnqtvenvqriiiegirpr
- Chain 'C':
Sequence, based on SEQRES records: (download)
>3locC (C:)
mtqgavkttgkrsravsakkkailsaaldtfsqfgfhgtrleqiaelagvsktnllyyfp
skealyiavlrqildiwlaplkafredfaplaaikeyirlklevsrdypqasrlfcmeml
agapllmdeltgdlkalideksaliagwvksgklapidpqhlifmiwastqhyadfapqv
eavtgatlrdevffnqtvenvqriiiegirpr
Sequence, based on observed residues (ATOM records): (download)
>3locC (C:)
sravsakkkailsaaldtfsqfgfhgtrleqiaelagvsktnllyyfpskealyiavlrq
ildiwlaplkafredfaplaaikeyirlklevsrdypqasrlfcmemlagapllmdeltg
dlkalideksaliagwvksgklapidpqhlifmiwastqhyadfapqveavtgatlrdev
ffnqtvenvqriiiegirpr
- Chain 'D':
Sequence, based on SEQRES records: (download)
>3locD (D:)
mtqgavkttgkrsravsakkkailsaaldtfsqfgfhgtrleqiaelagvsktnllyyfp
skealyiavlrqildiwlaplkafredfaplaaikeyirlklevsrdypqasrlfcmeml
agapllmdeltgdlkalideksaliagwvksgklapidpqhlifmiwastqhyadfapqv
eavtgatlrdevffnqtvenvqriiiegirpr
Sequence, based on observed residues (ATOM records): (download)
>3locD (D:)
rsravsakkkailsaaldtfsqfgfhgtrleqiaelagvsktnllyyfpskealyiavlr
qildiwlaplkafredfaplaaikeyirlklevsrdypqasrlfcmemlagapllmdelt
gdlkalideksaliagwvksgklapidpqhlifmiwastqhyadfapqveavtgatlrde
vffnqtvenvqriiiegirpr