PDB entry 3lgx

View 3lgx on RCSB PDB site
Description: Structure of probable D-alanine-poly(phosphoribitol) ligase subunit-1 from Streptococcus pyogenes with ATP
Class: ATP binding protein
Keywords: structural genomics, ATP-binding, Cytoplasm, Nucleotide-binding, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC, ATP binding protein
Deposited on 2010-01-21, released 2010-03-02
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-02-10, with a file datestamp of 2021-02-05.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: D-alanine--poly(phosphoribitol) ligase subunit 1
    Species: STREPTOCOCCUS PYOGENES [TaxId:160490]
    Gene: dltA, M5005_Spy1073, SPy_1312
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q99ZA6 (3-End)
      • expression tag (1-2)
    Domains in SCOPe 2.08: d3lgxa1, d3lgxa2
  • Chain 'B':
    Compound: D-alanine--poly(phosphoribitol) ligase subunit 1
    Species: STREPTOCOCCUS PYOGENES [TaxId:160490]
    Gene: dltA, M5005_Spy1073, SPy_1312
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q99ZA6 (3-End)
      • expression tag (1-2)
    Domains in SCOPe 2.08: d3lgxb1, d3lgxb2
  • Chain 'C':
    Compound: D-alanine--poly(phosphoribitol) ligase subunit 1
    Species: STREPTOCOCCUS PYOGENES [TaxId:160490]
    Gene: dltA, M5005_Spy1073, SPy_1312
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q99ZA6 (3-End)
      • expression tag (1-2)
    Domains in SCOPe 2.08: d3lgxc1, d3lgxc2
  • Chain 'D':
    Compound: D-alanine--poly(phosphoribitol) ligase subunit 1
    Species: STREPTOCOCCUS PYOGENES [TaxId:160490]
    Gene: dltA, M5005_Spy1073, SPy_1312
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q99ZA6 (3-End)
      • expression tag (1-2)
    Domains in SCOPe 2.08: d3lgxd1, d3lgxd2
  • Heterogens: ATP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3lgxA (A:)
mslkdmidsieqfaqtqadfpvydclgerrtygqlkrdsdsiaafidslallakspvlvf
gaqtydmlatfvaltksghayipvdvhsaperilaiieiakpsliiaieefpltiegisl
vslseiesaklaempyerthsvkgddnyyiiftsgttgqpkgvqishdnllsftnwmied
aafdvpkqpqmlaqppysfdlsvmywaptlalggtlfalpkelvadfkqlfttiaqlpvg
iwtstpsfadmamlsddfcqakmpalthfyfdgeeltvstarklferfpsakiinaygpt
eatvalsaieitremvdnytrlpigypkpdsptyiidedgkelssgeqgeiivtgpavsk
gylnnpektaeafftfkgqpayhtgdigsltednillyggrldfqikyagyrieledvsq
qlnqspmvasavavprynkehkvqnllayivvkdgvkerfdreleltkaikasvkdhmms
ymmpskflyrdslpltpngkidiktlinevnnreghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3lgxA (A:)
slkdmidsieqfaqtqadfpvydclgerrtygqlkrdsdsiaafidslallakspvlvfg
aqtydmlatfvaltksghayipvdvhsaperilaiieiakpsliiaieefpltiegislv
slseiesaklaempyerthsvkgddnyyiiftstgqpkgvqishdnllsftnwmiedaaf
dvpkqpqmlaqppysfdlsvmywaptlalggtlfalpkelvadfkqlfttiaqlpvgiwt
stpsfadmamlsddfcqakmpalthfyfdgeeltvstarklferfpsakiinaygpteat
valsaieitremvdnytrlpigypkpdsptyiidedgkelssgeqgeiivtgpavskgyl
nnpektaeafftfkgqpayhtgdigsltednillyggrldfqikyagyrieledvsqqln
qspmvasavavprynkehkvqnllayivvkdgvkerfdreleltkaikasvkdhmmsymm
pskflyrdslpltpngkidiktlinevn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3lgxB (B:)
mslkdmidsieqfaqtqadfpvydclgerrtygqlkrdsdsiaafidslallakspvlvf
gaqtydmlatfvaltksghayipvdvhsaperilaiieiakpsliiaieefpltiegisl
vslseiesaklaempyerthsvkgddnyyiiftsgttgqpkgvqishdnllsftnwmied
aafdvpkqpqmlaqppysfdlsvmywaptlalggtlfalpkelvadfkqlfttiaqlpvg
iwtstpsfadmamlsddfcqakmpalthfyfdgeeltvstarklferfpsakiinaygpt
eatvalsaieitremvdnytrlpigypkpdsptyiidedgkelssgeqgeiivtgpavsk
gylnnpektaeafftfkgqpayhtgdigsltednillyggrldfqikyagyrieledvsq
qlnqspmvasavavprynkehkvqnllayivvkdgvkerfdreleltkaikasvkdhmms
ymmpskflyrdslpltpngkidiktlinevnnreghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3lgxB (B:)
slkdmidsieqfaqtqadfpvydclgerrtygqlkrdsdsiaafidslallakspvlvfg
aqtydmlatfvaltksghayipvdvhsaperilaiieiakpsliiaieefpltiegislv
slseiesaklaempyerthsvkgddnyyiiftsgqpkgvqishdnllsftnwmiedaafd
vpkqpqmlaqppysfdlsvmywaptlalggtlfalpkelvadfkqlfttiaqlpvgiwts
tpsfadmamlsddfcqakmpalthfyfdgeeltvstarklferfpsakiinaygpteatv
alsaieitremvdnytrlpigypkpdsptyiidedgkelssgeqgeiivtgpavskgyln
npektaeafftfkgqpayhtgdigsltednillyggrldfqikyagyrieledvsqqlnq
spmvasavavprynkehkvqnllayivvkdgvkerfdreleltkaikasvkdhmmsymmp
skflyrdslpltpngkidiktlinevn

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3lgxC (C:)
mslkdmidsieqfaqtqadfpvydclgerrtygqlkrdsdsiaafidslallakspvlvf
gaqtydmlatfvaltksghayipvdvhsaperilaiieiakpsliiaieefpltiegisl
vslseiesaklaempyerthsvkgddnyyiiftsgttgqpkgvqishdnllsftnwmied
aafdvpkqpqmlaqppysfdlsvmywaptlalggtlfalpkelvadfkqlfttiaqlpvg
iwtstpsfadmamlsddfcqakmpalthfyfdgeeltvstarklferfpsakiinaygpt
eatvalsaieitremvdnytrlpigypkpdsptyiidedgkelssgeqgeiivtgpavsk
gylnnpektaeafftfkgqpayhtgdigsltednillyggrldfqikyagyrieledvsq
qlnqspmvasavavprynkehkvqnllayivvkdgvkerfdreleltkaikasvkdhmms
ymmpskflyrdslpltpngkidiktlinevnnreghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3lgxC (C:)
slkdmidsieqfaqtqadfpvydclgerrtygqlkrdsdsiaafidslallakspvlvfg
aqtydmlatfvaltksghayipvdvhsaperilaiieiakpsliiaieefpltiegislv
slseiesaklaempyerthsvkgddnyyiiftstgqpkgvqishdnllsftnwmiedaaf
dvpkqpqmlaqppysfdlsvmywaptlalggtlfalpkelvadfkqlfttiaqlpvgiwt
stpsfadmamlsddfcqakmpalthfyfdgeeltvstarklferfpsakiinaygpteat
valsaieitremvdnytrlpigypkpdsptyiidedgkelssgeqgeiivtgpavskgyl
nnpektaeafftfkgqpayhtgdigsltednillyggrldfqikyagyrieledvsqqln
qspmvasavavprynkehkvqnllayivvkdgvkerfdreleltkaikasvkdhmmsymm
pskflyrdslpltpngkidiktlinevn

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3lgxD (D:)
mslkdmidsieqfaqtqadfpvydclgerrtygqlkrdsdsiaafidslallakspvlvf
gaqtydmlatfvaltksghayipvdvhsaperilaiieiakpsliiaieefpltiegisl
vslseiesaklaempyerthsvkgddnyyiiftsgttgqpkgvqishdnllsftnwmied
aafdvpkqpqmlaqppysfdlsvmywaptlalggtlfalpkelvadfkqlfttiaqlpvg
iwtstpsfadmamlsddfcqakmpalthfyfdgeeltvstarklferfpsakiinaygpt
eatvalsaieitremvdnytrlpigypkpdsptyiidedgkelssgeqgeiivtgpavsk
gylnnpektaeafftfkgqpayhtgdigsltednillyggrldfqikyagyrieledvsq
qlnqspmvasavavprynkehkvqnllayivvkdgvkerfdreleltkaikasvkdhmms
ymmpskflyrdslpltpngkidiktlinevnnreghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3lgxD (D:)
slkdmidsieqfaqtqadfpvydclgerrtygqlkrdsdsiaafidslallakspvlvfg
aqtydmlatfvaltksghayipvdvhsaperilaiieiakpsliiaieefpltiegislv
slseiesaklaempyerthsvkgddnyyiiftstgqpkgvqishdnllsftnwmiedaaf
dvpkqpqmlaqppysfdlsvmywaptlalggtlfalpkelvadfkqlfttiaqlpvgiwt
stpsfadmamlsddfcqakmpalthfyfdgeeltvstarklferfpsakiinaygpteat
valsaieitremvdnytrlpigypkpdsptyiidedgkelssgeqgeiivtgpavskgyl
nnpektaeafftfkgqpayhtgdigsltednillyggrldfqikyagyrieledvsqqln
qspmvasavavprynkehkvqnllayivvkdgvkerfdreleltkaikasvkdhmmsymm
pskflyrdslpltpngkidiktlinevn