PDB entry 3lgh

View 3lgh on RCSB PDB site
Description: Crystal structure of NikR from Helicobacter pylori with variable Ni site coordination
Class: metal binding protein
Keywords: NikR, Nickel coordination, Helicobacter pylori, octahedral, square planar, DNA-binding, Metal-binding, Nickel, Transcription, Transcription regulation, METAL BINDING PROTEIN, square pyramidal
Deposited on 2010-01-20, released 2010-09-15
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-11-01, with a file datestamp of 2017-10-27.
Experiment type: XRAY
Resolution: 2.37 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nickel-responsive regulator
    Species: Helicobacter pylori [TaxId:85962]
    Gene: HP_1338, NikR
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3lgha1, d3lgha2
  • Chain 'B':
    Compound: Nickel-responsive regulator
    Species: Helicobacter pylori [TaxId:85962]
    Gene: HP_1338, NikR
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3lghb1, d3lghb2
  • Chain 'C':
    Compound: Nickel-responsive regulator
    Species: Helicobacter pylori [TaxId:85962]
    Gene: HP_1338, NikR
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3lghc_
  • Chain 'D':
    Compound: Nickel-responsive regulator
    Species: Helicobacter pylori [TaxId:85962]
    Gene: HP_1338, NikR
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3lghd_
  • Heterogens: NI, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3lghA (A:)
mdtpnkddsiirfsvslqqnlldeldnriikngyssrselvrdmireklvednwaednpn
deskiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfei
qrlqleigglrgvkfakltkassfeyne

    Sequence, based on observed residues (ATOM records): (download) 
    >3lghA (A:)
iirfsvslqqnlldeldnriikngyssrselvrdmireklvednwaednpeskiavlvvi
ydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfeiqrlqleigglr
gvkfakltkas

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3lghB (B:)
mdtpnkddsiirfsvslqqnlldeldnriikngyssrselvrdmireklvednwaednpn
deskiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfei
qrlqleigglrgvkfakltkassfeyne

    Sequence, based on observed residues (ATOM records): (download) 
    >3lghB (B:)
siirfsvslqqnlldeldnriikngyssrselvrdmireklvednwaednpndeskiavl
vviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfeiqrlqleig
glrgvkfakltkassfeyn

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3lghC (C:)
mdtpnkddsiirfsvslqqnlldeldnriikngyssrselvrdmireklvednwaednpn
deskiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfei
qrlqleigglrgvkfakltkassfeyne

    Sequence, based on observed residues (ATOM records): (download) 
    >3lghC (C:)
kiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfeiqrl
qleigglrgvkfakltkas

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3lghD (D:)
mdtpnkddsiirfsvslqqnlldeldnriikngyssrselvrdmireklvednwaednpn
deskiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfei
qrlqleigglrgvkfakltkassfeyne

    Sequence, based on observed residues (ATOM records): (download) 
    >3lghD (D:)
kiavlvviydhhqrelnqrmidiqhasgthvlctthihmdehncletiilqgnsfeiqrl
qleigglrgvkfakltka