PDB entry 3ler

View 3ler on RCSB PDB site
Description: Crystal Structure of Dihydrodipicolinate Synthase from Campylobacter jejuni subsp. jejuni NCTC 11168
Class: lyase
Keywords: TIM barrel, Amino-acid biosynthesis, Cytoplasm, Diaminopimelate biosynthesis, Lyase, Lysine biosynthesis, Schiff base, Structural Genomics, Center for Structural Genomics of Infectious Diseases, CSGID
Deposited on 2010-01-15, released 2010-01-26
The last revision prior to the SCOPe 2.06 freeze date was dated 2010-01-26, with a file datestamp of 2010-01-22.
Experiment type: XRAY
Resolution: 1.84 Å
R-factor: 0.154
AEROSPACI score: 0.54 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Dihydrodipicolinate synthase
    Species: Campylobacter jejuni subsp. jejuni [TaxId:192222]
    Gene: dapA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3lera_
  • Chain 'B':
    Compound: Dihydrodipicolinate synthase
    Species: Campylobacter jejuni subsp. jejuni [TaxId:192222]
    Gene: dapA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3lerb_
  • Chain 'C':
    Compound: Dihydrodipicolinate synthase
    Species: Campylobacter jejuni subsp. jejuni [TaxId:192222]
    Gene: dapA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3lerc_
  • Chain 'D':
    Compound: Dihydrodipicolinate synthase
    Species: Campylobacter jejuni subsp. jejuni [TaxId:192222]
    Gene: dapA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d3lerd_
  • Heterogens: EDO, MG, FMT, PEG, ACY, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3lerA (A:)
snamdkniiigamtalitpfkngkvdeqsyarlikrqiengidavvpvgttgesatlthe
ehrtcieiavetckgtkvkvlagagsnatheavglakfakehgadgilsvapyynkptqq
glyehykaiaqsvdipvllynvpgrtgceistdtiiklfrdceniygvkeasgnidkcvd
llaheprmmlisgedainypilsnggkgvisvtsnllpdmisalthfaldenykeakkin
delyninkilfcesnpipiktamylaglieslefrlplcspskenfakieevmkkykikg
f

    Sequence, based on observed residues (ATOM records): (download) 
    >3lerA (A:)
mdkniiigamtalitpfkngkvdeqsyarlikrqiengidavvpvgttgesatltheehr
tcieiavetckgtkvkvlagagsnatheavglakfakehgadgilsvapyynkptqqgly
ehykaiaqsvdipvllynvpgrtgceistdtiiklfrdceniygvkeasgnidkcvdlla
heprmmlisgedainypilsnggkgvisvtsnllpdmisalthfaldenykeakkindel
yninkilfcesnpipiktamylaglieslefrlplcspskenfakieevmkkykikgf

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3lerB (B:)
snamdkniiigamtalitpfkngkvdeqsyarlikrqiengidavvpvgttgesatlthe
ehrtcieiavetckgtkvkvlagagsnatheavglakfakehgadgilsvapyynkptqq
glyehykaiaqsvdipvllynvpgrtgceistdtiiklfrdceniygvkeasgnidkcvd
llaheprmmlisgedainypilsnggkgvisvtsnllpdmisalthfaldenykeakkin
delyninkilfcesnpipiktamylaglieslefrlplcspskenfakieevmkkykikg
f

    Sequence, based on observed residues (ATOM records): (download) 
    >3lerB (B:)
mdkniiigamtalitpfkngkvdeqsyarlikrqiengidavvpvgttgesatltheehr
tcieiavetckgtkvkvlagagsnatheavglakfakehgadgilsvapyynkptqqgly
ehykaiaqsvdipvllynvpgrtgceistdtiiklfrdceniygvkeasgnidkcvdlla
heprmmlisgedainypilsnggkgvisvtsnllpdmisalthfaldenykeakkindel
yninkilfcesnpipiktamylaglieslefrlplcspskenfakieevmkkykikgf

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3lerC (C:)
snamdkniiigamtalitpfkngkvdeqsyarlikrqiengidavvpvgttgesatlthe
ehrtcieiavetckgtkvkvlagagsnatheavglakfakehgadgilsvapyynkptqq
glyehykaiaqsvdipvllynvpgrtgceistdtiiklfrdceniygvkeasgnidkcvd
llaheprmmlisgedainypilsnggkgvisvtsnllpdmisalthfaldenykeakkin
delyninkilfcesnpipiktamylaglieslefrlplcspskenfakieevmkkykikg
f

    Sequence, based on observed residues (ATOM records): (download) 
    >3lerC (C:)
kniiigamtalitpfkngkvdeqsyarlikrqiengidavvpvgttgesatltheehrtc
ieiavetckgtkvkvlagagsnatheavglakfakehgadgilsvapyynkptqqglyeh
ykaiaqsvdipvllynvpgrtgceistdtiiklfrdceniygvkeasgnidkcvdllahe
prmmlisgedainypilsnggkgvisvtsnllpdmisalthfaldenykeakkindelyn
inkilfcesnpipiktamylaglieslefrlplcspskenfakieevmkkykikgf

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >3lerD (D:)
snamdkniiigamtalitpfkngkvdeqsyarlikrqiengidavvpvgttgesatlthe
ehrtcieiavetckgtkvkvlagagsnatheavglakfakehgadgilsvapyynkptqq
glyehykaiaqsvdipvllynvpgrtgceistdtiiklfrdceniygvkeasgnidkcvd
llaheprmmlisgedainypilsnggkgvisvtsnllpdmisalthfaldenykeakkin
delyninkilfcesnpipiktamylaglieslefrlplcspskenfakieevmkkykikg
f

    Sequence, based on observed residues (ATOM records): (download) 
    >3lerD (D:)
mdkniiigamtalitpfkngkvdeqsyarlikrqiengidavvpvgttgesatltheehr
tcieiavetckgtkvkvlagagsnatheavglakfakehgadgilsvapyynkptqqgly
ehykaiaqsvdipvllynvpgrtgceistdtiiklfrdceniygvkeasgnidkcvdlla
heprmmlisgedainypilsnggkgvisvtsnllpdmisalthfaldenykeakkindel
yninkilfcesnpipiktamylaglieslefrlplcspskenfakieevmkkykikgf