PDB entry 3ldz

View 3ldz on RCSB PDB site
Description: Crystal structure of human STAM1 VHS domain in complex with ubiquitin
Class: protein transport
Keywords: ubiquitin-binding, Cytoplasm, Ubl conjugation, Endosome, Membrane, Protein transport, SH3 domain, Transport
Deposited on 2010-01-13, released 2010-03-02
The last revision prior to the SCOPe 2.07 freeze date was dated 2017-11-01, with a file datestamp of 2017-10-27.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Signal transducing adapter molecule 1
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ldza_
  • Chain 'B':
    Compound: Signal transducing adapter molecule 1
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ldzb_
  • Chain 'C':
    Compound: Signal transducing adapter molecule 1
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ldzc_
  • Chain 'D':
    Compound: Signal transducing adapter molecule 1
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ldzd_
  • Chain 'E':
    Compound: Ubiquitin
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ldze_
  • Chain 'F':
    Compound: Ubiquitin
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ldzf_
  • Chain 'G':
    Compound: Ubiquitin
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d3ldzg_

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3ldzA (A:)
    fatnpfdqdvekatsemntaedwglildicdkvgqsrtgpkdclrsimrrvnhkdphvam
    qaltllgacvsncgkifhlevcsrdfasevsnvlnkghpkvceklkalmvewtdefkndp
    qlslisamiknlkeqgvtfp
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3ldzB (B:)
    fatnpfdqdvekatsemntaedwglildicdkvgqsrtgpkdclrsimrrvnhkdphvam
    qaltllgacvsncgkifhlevcsrdfasevsnvlnkghpkvceklkalmvewtdefkndp
    qlslisamiknlkeqgvtfp
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3ldzC (C:)
    fatnpfdqdvekatsemntaedwglildicdkvgqsrtgpkdclrsimrrvnhkdphvam
    qaltllgacvsncgkifhlevcsrdfasevsnvlnkghpkvceklkalmvewtdefkndp
    qlslisamiknlkeqgvtfp
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3ldzD (D:)
    fatnpfdqdvekatsemntaedwglildicdkvgqsrtgpkdclrsimrrvnhkdphvam
    qaltllgacvsncgkifhlevcsrdfasevsnvlnkghpkvceklkalmvewtdefkndp
    qlslisamiknlkeqgvtfp
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3ldzE (E:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrl
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3ldzF (F:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrl
    

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download)
    >3ldzG (G:)
    mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
    iqkestlhlvlrl