PDB entry 3ldb
View 3ldb on RCSB PDB site
Description: Structure of JMJD6 complexd with ALPHA-KETOGLUTARATE and Fab Fragment.
Class: immune system
Keywords: JMJ6D, ALPHA-KETOGLUTARATE, Fab Fragments, IMMUNE SYSTEM
Deposited on
2010-01-12, released
2010-08-04
The last revision prior to the SCOPe 2.04 freeze date was dated
2012-06-20, with a file datestamp of
2012-06-15.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.25
AEROSPACI score: 0.23
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6
Species: Homo sapiens [TaxId:9606]
Gene: JMJD6, JMJD6 (1-403), KIAA0585, PTDSR
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: antibody fab fragment light chain
Species: Cricetulus migratorius [TaxId:10032]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d3ldbb1, d3ldbb2 - Chain 'C':
Compound: antibody fab fragment heavy chain
Species: Cricetulus migratorius [TaxId:10032]
Database cross-references and differences (RAF-indexed):
- Heterogens: GOL, SO4, AKG, FE, HG
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence, based on SEQRES records: (download)
>3ldbB (B:)
divmtqspsslavsagekvtmscrssqslyysgikknllawyqlkpgqspklliyyastl
ftgvpdrftgsgsgtdytltitsvqaedmgqyfcqqgisnpytfgagtkleikradakpt
vsifppsseqlgtgsatlvcfvnnfypkdinvkwkvdgsekrdgvlqsvtdqdskdstys
lsstlsltkadyerhnlytcevthktstaaivktlnrnec
Sequence, based on observed residues (ATOM records): (download)
>3ldbB (B:)
divmtqspsslavsagekvtmscrssqslyysgikknllawyqlkpgqspklliyyastl
ftgvpdrftgsgsgtdytltitsvqaedmgqyfcqqgisnpytfgagtkleikradakpt
vsifppsseqlgtgsatlvcfvnnfypkdinvkwkvdgsekrdgvlqsvtdqdskdstys
lsstlsltkadyerhnlytcevthktstaaivktlnr
- Chain 'C':
No sequence available.