PDB entry 3lab

View 3lab on RCSB PDB site
Description: Crystal structure of a putative Kdpg (2-keto-3-deoxy-6-phosphogluconate) aldolase from Oleispira antarctica
Class: structural genomics, unknown function
Keywords: Unknown function, Putative Kdpg (2-keto-3-deoxy-6-phosphogluconate) aldolase, Aldolase superfamily, Class I aldolase, KDPG aldolase domain, Alpha/beta protein, TIM beta/alpha BARREL, TIM BARREL, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, ONTARIO CENTRE FOR STRUCTURAL PROTEOMICS, OCSP
Deposited on 2010-01-06, released 2010-01-19
The last revision prior to the SCOPe 2.08 freeze date was dated 2012-01-18, with a file datestamp of 2012-01-13.
Experiment type: XRAY
Resolution: 1.84 Å
R-factor: 0.173
AEROSPACI score: 0.51 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: putative Kdpg (2-keto-3-deoxy-6-phosphogluconate) aldolase
    Species: Oleispira antarctica [TaxId:188908]
    Database cross-references and differences (RAF-indexed):
    • PDB 3LAB (Start-216)
    Domains in SCOPe 2.08: d3laba_
  • Chain 'B':
    Compound: putative Kdpg (2-keto-3-deoxy-6-phosphogluconate) aldolase
    Species: Oleispira antarctica [TaxId:188908]
    Database cross-references and differences (RAF-indexed):
    • PDB 3LAB (Start-216)
    Domains in SCOPe 2.08: d3labb_
  • Heterogens: PYR, NA, CL, IPA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3labA (A:)
gmtqldtwlantkplipvividdlvhaipmakalvaggvhllevtlrteaglaaisaikk
avpeaivgagtvctaddfqkaidagaqfivspgltpeliekakqvkldgqwqgvflpgva
tasevmiaaqagitqlkcfpasaiggakllkawsgpfpdiqfcptggiskdnykeylglp
nvicaggswltesklliegdwnevtrraseivklsdi

    Sequence, based on observed residues (ATOM records): (download) 
    >3labA (A:)
mtqldtwlantkplipvividdlvhaipmakalvaggvhllevtlrteaglaaisaikka
vpeaivgagtvctaddfqkaidagaqfivspgltpeliekakqvkldgqwqgvflpgvat
asevmiaaqagitqlkcfpasaiggakllkawsgpfpdiqfcptggiskdnykeylglpn
vicaggswltesklliegdwnevtrraseivklsdi

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3labB (B:)
gmtqldtwlantkplipvividdlvhaipmakalvaggvhllevtlrteaglaaisaikk
avpeaivgagtvctaddfqkaidagaqfivspgltpeliekakqvkldgqwqgvflpgva
tasevmiaaqagitqlkcfpasaiggakllkawsgpfpdiqfcptggiskdnykeylglp
nvicaggswltesklliegdwnevtrraseivklsdi

    Sequence, based on observed residues (ATOM records): (download) 
    >3labB (B:)
mtqldtwlantkplipvividdlvhaipmakalvaggvhllevtlrteaglaaisaikka
vpeaivgagtvctaddfqkaidagaqfivspgltpeliekakqvkldgqwqgvflpgvat
asevmiaaqagitqlkcfpasaiggakllkawsgpfpdiqfcptggiskdnykeylglpn
vicaggswltesklliegdwnevtrraseivklsdi