PDB entry 3l9r

View 3l9r on RCSB PDB site
Description: Crystal structure of bovine CD1b3 with endogenously bound ligands
Class: Immune Response
Keywords: antigen presentation, cattle, CD1, Immune response, Immunoglobulin domain, MHC I
Deposited on 2010-01-05, released 2010-06-16
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: CD1b3
    Species: Bos taurus [TaxId:9913]
    Gene: CD1B3
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q1L1H6 (Start-276)
      • expression tag (277)
    Domains in SCOPe 2.08: d3l9ra1, d3l9ra2, d3l9ra3
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Bos taurus [TaxId:9913]
    Gene: B2M, beta-2-microglobulin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3l9rb_
  • Chain 'C':
    Compound: CD1b3
    Species: Bos taurus [TaxId:9913]
    Gene: CD1B3
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q1L1H6 (Start-276)
      • expression tag (277)
    Domains in SCOPe 2.08: d3l9rc1, d3l9rc2, d3l9rc3
  • Chain 'D':
    Compound: Beta-2-microglobulin
    Species: Bos taurus [TaxId:9913]
    Gene: B2M, beta-2-microglobulin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3l9rd_
  • Chain 'E':
    Compound: CD1b3
    Species: Bos taurus [TaxId:9913]
    Gene: CD1B3
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q1L1H6 (Start-276)
      • expression tag (277)
    Domains in SCOPe 2.08: d3l9re1, d3l9re2, d3l9re3
  • Chain 'F':
    Compound: Beta-2-microglobulin
    Species: Bos taurus [TaxId:9913]
    Gene: B2M, beta-2-microglobulin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3l9rf_
  • Chain 'G':
    Compound: CD1b3
    Species: Bos taurus [TaxId:9913]
    Gene: CD1B3
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q1L1H6 (Start-276)
      • expression tag (277)
    Domains in SCOPe 2.08: d3l9rg1, d3l9rg2, d3l9rg3
  • Chain 'H':
    Compound: Beta-2-microglobulin
    Species: Bos taurus [TaxId:9913]
    Gene: B2M, beta-2-microglobulin
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d3l9rh_
  • Heterogens: NAG, L9R, GOL, L9Q, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3l9rA (A:)
edvfqgptsfhlmqistfvnstwaqnqgsgwlddlqihgwesdsgtaiflkpwskgnfsd
devtelvdlfrayfigftrevqdrvnefqleypfviqvtagcelhsgeaiesslrgalgg
ldfvsiqnhscvpapdsgsrgqkfcalttqyqgisdiierllsetcpryllgvldagkae
lqrqvkpeawlssgptpgpgrlllvchvsgfypkpvrvmwmrgeqeqpgtqqgdlmpnad
wtwylrvtlnvaageaaglncrvkhsslgdqdiilywhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3l9rA (A:)
vfqgptsfhlmqistfvnstwaqnqgsgwlddlqihgwesdsgtaiflkpwskgnfsdde
vtelvdlfrayfigftrevqdrvnefqleypfviqvtagcelhsgaiesslrgalggldf
vsiqnhscvpapdsgsrgqkfcalttqyqgisdiierllsetcpryllgvldagkaelqr
qvkpeawlssgptpgpgrlllvchvsgfypkpvrvmwmrgeqeqpgtqqgdlmpnadwtw
ylrvtlnvaageaaglncrvkhsslgdqdiilywh

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3l9rB (B:)
iqrppkiqvysrhppedgkpnylncyvygfhppqieidllkngekikseqsdlsfskdws
fyllshaeftpnskdqyscrvkhvtleqprivkwdrdl

    Sequence, based on observed residues (ATOM records): (download) 
    >3l9rB (B:)
iqrppkiqvysrhppedgkpnylncyvygfhppqieidllkngekikseqsdlsfskdws
fyllshaeftpnskdqyscrvkhvtleqprivkwdrd

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >3l9rC (C:)
edvfqgptsfhlmqistfvnstwaqnqgsgwlddlqihgwesdsgtaiflkpwskgnfsd
devtelvdlfrayfigftrevqdrvnefqleypfviqvtagcelhsgeaiesslrgalgg
ldfvsiqnhscvpapdsgsrgqkfcalttqyqgisdiierllsetcpryllgvldagkae
lqrqvkpeawlssgptpgpgrlllvchvsgfypkpvrvmwmrgeqeqpgtqqgdlmpnad
wtwylrvtlnvaageaaglncrvkhsslgdqdiilywhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3l9rC (C:)
vfqgptsfhlmqistfvnstwaqnqgsgwlddlqihgwesdsgtaiflkpwskgnfsdde
vtelvdlfrayfigftrevqdrvnefqleypfviqvtagcelhsgaiesslrgalggldf
vsiqnhscvpapdsgsrgqkfcalttqyqgisdiierllsetcpryllgvldagkaelqr
qvkpeawlssgptpgprlllvchvsgfypkpvrvmwmrgeqeqpgtqqgdlmpnadwtwy
lrvtlnvaageaaglncrvkhsslgdqdiilywh

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3l9rD (D:)
iqrppkiqvysrhppedgkpnylncyvygfhppqieidllkngekikseqsdlsfskdws
fyllshaeftpnskdqyscrvkhvtleqprivkwdrdl

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3l9rE (E:)
edvfqgptsfhlmqistfvnstwaqnqgsgwlddlqihgwesdsgtaiflkpwskgnfsd
devtelvdlfrayfigftrevqdrvnefqleypfviqvtagcelhsgeaiesslrgalgg
ldfvsiqnhscvpapdsgsrgqkfcalttqyqgisdiierllsetcpryllgvldagkae
lqrqvkpeawlssgptpgpgrlllvchvsgfypkpvrvmwmrgeqeqpgtqqgdlmpnad
wtwylrvtlnvaageaaglncrvkhsslgdqdiilywhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3l9rE (E:)
vfqgptsfhlmqistfvnstwaqnqgsgwlddlqihgwesdsgtaiflkpwskgnfsdde
vtelvdlfrayfigftrevqdrvnefqleypfviqvtagcelhsgaiesslrgalggldf
vsiqnhscvpapdsgsrgqkfcalttqyqgisdiierllsetcpryllgvldagkaelqr
qvkpeawlssgptpgpgrlllvchvsgfypkpvrvmwmrgeqeqpgtqqgdlmpnadwtw
ylrvtlnvaageaaglncrvkhsslgdqdiilywh

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3l9rF (F:)
iqrppkiqvysrhppedgkpnylncyvygfhppqieidllkngekikseqsdlsfskdws
fyllshaeftpnskdqyscrvkhvtleqprivkwdrdl

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >3l9rG (G:)
edvfqgptsfhlmqistfvnstwaqnqgsgwlddlqihgwesdsgtaiflkpwskgnfsd
devtelvdlfrayfigftrevqdrvnefqleypfviqvtagcelhsgeaiesslrgalgg
ldfvsiqnhscvpapdsgsrgqkfcalttqyqgisdiierllsetcpryllgvldagkae
lqrqvkpeawlssgptpgpgrlllvchvsgfypkpvrvmwmrgeqeqpgtqqgdlmpnad
wtwylrvtlnvaageaaglncrvkhsslgdqdiilywhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3l9rG (G:)
vfqgptsfhlmqistfvnstwaqnqgsgwlddlqihgwesdsgtaiflkpwskgnfsdde
vtelvdlfrayfigftrevqdrvnefqleypfviqvtagcelhsgaiesslrgalggldf
vsiqnhscvpapdsgsrgqkfcalttqyqgisdiierllsetcpryllgvldagkaelqr
qvkpeawlssgptpgpgrlllvchvsgfypkpvrvmwmrgeqeqpgtqqgdlmpnadwtw
ylrvtlnvaageaaglncrvkhsslgdqdiilywh

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >3l9rH (H:)
iqrppkiqvysrhppedgkpnylncyvygfhppqieidllkngekikseqsdlsfskdws
fyllshaeftpnskdqyscrvkhvtleqprivkwdrdl