PDB entry 3l8c

View 3l8c on RCSB PDB site
Description: Structure of probable D-alanine--poly(phosphoribitol) ligase subunit-1 from Streptococcus pyogenes
Class: ligase
Keywords: structural genomics, D-alanine-poly(phosphoribitol) ligase, dltA, ATP-binding, Cytoplasm, Ligase, Nucleotide-binding, PSI-2, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC
Deposited on 2009-12-30, released 2010-01-19
The last revision prior to the SCOPe 2.05 freeze date was dated 2010-01-19, with a file datestamp of 2010-01-15.
Experiment type: XRAY
Resolution: 2.41 Å
R-factor: 0.22
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: D-alanine--poly(phosphoribitol) ligase subunit 1
    Species: Streptococcus pyogenes serotype M6 [TaxId:301450]
    Gene: dltA, M6_Spy1043
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5XBN5 (3-End)
      • expression tag (1-2)
    Domains in SCOPe 2.05: d3l8ca_
  • Chain 'B':
    Compound: D-alanine--poly(phosphoribitol) ligase subunit 1
    Species: Streptococcus pyogenes serotype M6 [TaxId:301450]
    Gene: dltA, M6_Spy1043
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q5XBN5 (3-End)
      • expression tag (1-2)
    Domains in SCOPe 2.05: d3l8cb_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3l8cA (A:)
mslkdmidsieqfaqtqadfpvydclgerrtygqlkrdsdsiaafidslallakspvlvf
gaqtydmlatfvaltksghayipvdvhsaperilaiieiakpsliiaieefpltiegisl
vslseiesaklaempyerthsvkgddnyyiiftsgttgqpkgvqishdnllsftnwmied
aafdvpkqpqmlaqppysfdlsvmywaptlalggtlfalpkelvadfkqlfttiaqlpvg
iwtstpsfadmamlsddfcqakmpalthfyfdgeeltvstarklferfpsakiinaygpt
eatvalsaieitremvdnytrlpigypkpdsptyiidedgkelssgeqgeiivtgpavsk
gylnnpektaeafftfkgqpayhtgdigsltednillyggrldfqikyagyrieledvsq
qlnqspmvasavavprynkehkvqnllayivvkdgvkerfdreleltkaikasvkdhmms
ymmpskflyrdslpltpngkidiktlinevnnreghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3l8cA (A:)
slkdmidsieqfaqtqadfpvydclgerrtygqlkrdsdsiaafidslallakspvlvfg
aqtydmlatfvaltksghayipvdvhsaperilaiieiakpsliiaieefpltiegislv
slseiesaklaempyerthsvkgddnyyiiftsgqpkgvqishdnllsftnwmiedaafd
vpkqpqmlaqppysfdlsvmywaptlalggtlfalpkelvadfkqlfttiaqlpvgiwts
tpsfadmamlsddfcqakmpalthfyfdgeeltvstarklferfpsakiinaygpteatv
alsaieitremvdnytrlpigypkpdsptyiidedgkelssgeqgeiivtgpavskgyln
npektaeafftfkgqpayhtgdigsltednillyggrldfqikieledvsqqlnqspmva
savavprynkehkllayivvkdgvkerfdreleltkaikasvkdhmmsymmpskflyrds
lpltpngkidiktlinevn

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3l8cB (B:)
mslkdmidsieqfaqtqadfpvydclgerrtygqlkrdsdsiaafidslallakspvlvf
gaqtydmlatfvaltksghayipvdvhsaperilaiieiakpsliiaieefpltiegisl
vslseiesaklaempyerthsvkgddnyyiiftsgttgqpkgvqishdnllsftnwmied
aafdvpkqpqmlaqppysfdlsvmywaptlalggtlfalpkelvadfkqlfttiaqlpvg
iwtstpsfadmamlsddfcqakmpalthfyfdgeeltvstarklferfpsakiinaygpt
eatvalsaieitremvdnytrlpigypkpdsptyiidedgkelssgeqgeiivtgpavsk
gylnnpektaeafftfkgqpayhtgdigsltednillyggrldfqikyagyrieledvsq
qlnqspmvasavavprynkehkvqnllayivvkdgvkerfdreleltkaikasvkdhmms
ymmpskflyrdslpltpngkidiktlinevnnreghhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3l8cB (B:)
slkdmidsieqfaqtqadfpvydclgerrtygqlkrdsdsiaafidslallakspvlvfg
aqtydmlatfvaltksghayipvdvhsaperilaiieiakpsliiaieefpltiegislv
slseiesaklaempyerthsvkgddnyyiiftsgttgqpkgvqishdnllsftnwmieda
afdvpkqpqmlaqppysfdlsvmywaptlalggtlfalpkelvadfkqlfttiaqlpvgi
wtstpsfadmamlsddfcqakmpalthfyfdgeeltvstarklferfpsakiinaygpte
atvalsaieitremvdnytrlpigypkpdsptyiidedgkelssgeqgeiivtgpavskg
ylnnpektaeafftfkgqpayhtgdigsltednillyggrldfqikyagyrieledvsqq
lnqspmvasavavprynkehkvqnllayivvkdgvkerfdreleltkaikasvkdhmmsy
mmpskflyrdslpltpngkidiktlinevn