PDB entry 3kw5
View 3kw5 on RCSB PDB site
Description: Crystal structure of ubiquitin carboxy terminal hydrolase L1 bound to ubiquitin vinylmethylester
Class: hydrolase/signaling protein
Keywords: enzyme-suicide substrate complex, hydrolase, ligase, protease, thiol protease, UBL conjugation pathway, isopeptide bond, UBL conjugation, hydrolase-hydrolase inhibitor complex, Acetylation, Cytoplasm, Disease mutation, Glycoprotein, Oxidation, Polymorphism, Nucleus, Phosphoprotein, HYDROLASE-SIGNALING PROTEIN complex
Deposited on
2009-11-30, released
2010-06-16
The last revision prior to the SCOPe 2.03 freeze date was dated
2010-06-16, with a file datestamp of
2010-06-11.
Experiment type: XRAY
Resolution: 2.83 Å
R-factor: 0.235
AEROSPACI score: 0.24
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Ubiquitin carboxyl-terminal hydrolase isozyme L1
Species: Homo sapiens [TaxId:9606]
Gene: PGP9.5, UCHL1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3kw5a_ - Chain 'B':
Compound: Ubiquitin
Species: Homo sapiens [TaxId:9606]
Gene: RPS27A, UBA52, UBA80, UBB, UBC, UBCEP1, UBCEP2, UBIQ_HUMAN
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.03: d3kw5b_ - Heterogens: GVE
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>3kw5A (A:)
gplgsmqlkpmeinpemlnkvlsrlgvagqwrfvdvlgleeeslgsvpapacallllfpl
taqhenfrkkqieelkgqevspkvyfmkqtignscgtiglihavannqdklgfedgsvlk
qflsetekmspedrakcfekneaiqaahdavaqegqcrvddkvnfhfilfnnvdghlyel
dgrmpfpvnhgassedtllkdaakvcreftereqgevrfsavalckaa
Sequence, based on observed residues (ATOM records): (download)
>3kw5A (A:)
mqlkpmeinpemlnkvlsrlgvagqwrfvdvlgleeeslgsvpapacallllfpltaqhe
nfrkkqieelkgqevspkvyfmkqtignscgtiglihavannqdklgfedgsvlkqflse
tekmspedrakcfekneaiqaahdavaqegqcrvddkvnfhfilfnnvdghlyeldgrmp
fpvnhgassedtllkdaakvcreftereqgevrfsavalckaa
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>3kw5B (B:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrg